View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_59 (Length: 379)
Name: NF1172_high_59
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_59 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 51 - 368
Target Start/End: Complemental strand, 38464027 - 38463709
Alignment:
| Q |
51 |
ttaatacatgcaggtttttagaggagacaaattgtgtagggatgtgcgttaatatgtgcaaacttccaactcaatcgtttataaagaacaccctgggtat |
150 |
Q |
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| T |
38464027 |
ttaatacatgcaggtttttggaggagacaaattgtgtagggatgtgcgttaatatgtgcaaacttccaactcaatcgtttataaagaacaccctgggtat |
38463928 |
T |
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| Q |
151 |
gccagtcaacatggtaccaagtaagtatcctaacaattctaaaattaaacctaaataggaaatatcatgatgctg-aaaatgaactaagtttatctattt |
249 |
Q |
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| T |
38463927 |
gccagtcaacatggtaccaagtaagtatcctaacaattccaaaattaaacctaaataggaaatatcatgatgctgaaaaatgaactaagtttatctattt |
38463828 |
T |
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| Q |
250 |
ttagtaagtccactaaaaaataaacaaaagaaagaatgttagttaacacacttgaaagagtatcatgacctctacaagcctccactacattgtggaggtc |
349 |
Q |
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| T |
38463827 |
ttagtaagtccactaaaaaataaacaaaagaaagaatgttagttaacacacttgaaagagtatcatggcctctacaagcctccactacattgtggaggtc |
38463728 |
T |
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| Q |
350 |
agcatcattattgattcat |
368 |
Q |
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| T |
38463727 |
agcatcattattgattcat |
38463709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 31458195 - 31458311
Alignment:
| Q |
59 |
tgcaggtttttagaggagacaaattgtgtagggatgtgcgttaatatgtgcaaacttccaactcaatcgtttataaagaacaccctgggtatgccagtca |
158 |
Q |
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| T |
31458195 |
tgcagattcttagaagaaacaaattgtgttgggatgtgtattaatctctgcaaaatgccatctcaattgttcataaaggactcgtttggtatgccagtca |
31458294 |
T |
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| Q |
159 |
acatggtaccaagtaag |
175 |
Q |
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| T |
31458295 |
acatggtcccaagtaag |
31458311 |
T |
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