View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_6 (Length: 667)
Name: NF1172_high_6
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 98 - 658
Target Start/End: Complemental strand, 49085968 - 49085403
Alignment:
| Q |
98 |
tcatcgttattagacataagcatactagttaaaccacagccctaacaagtaagatttaca----cgaggtacaataaaaaattcaaatcaatcactacat |
193 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
49085968 |
tcatcgttattagacataagcatgctagttaaaccacagccctaacaagtaagatttaaataaacgaggtacaataaaaaattcaaatcaatcactacat |
49085869 |
T |
|
| Q |
194 |
aataattacaatcctaaatttgtaggagacagtcaatgagtcaatataattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaatttg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085868 |
aataattacaatcctaaatttgtaggagacagtcaatgagtcaatgtaattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaatttg |
49085769 |
T |
|
| Q |
294 |
atttcactagacctacactacagttaaccattgttgagtcaaattagtgttcaagtcagactgtaaatcaataatgaaggtaacttgaaacaaaacaatc |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085768 |
atttcactagacctacactacagttaaccattgttgagtcaaattagtgttcaagtcagactgtaaatcaataatgaaggtaacttgaaacaaaacaatc |
49085669 |
T |
|
| Q |
394 |
tcagtagcctctggtttcagctactggaacttcaccctgtacttggcgaacaaactgccctttcacccgggggcggttctctgcctgtctttttcggctt |
493 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085668 |
tcagtagcctctggtttcagctaccggaacttcaccctgtacttggcgaacaaactgccctttcacccgggggcggttctctgcctgtctttttcggctt |
49085569 |
T |
|
| Q |
494 |
tcatatcggacctgtaaaataaatttgaccaatgagcatctgaaatatctttaataatgtcagcctagacatgtttgagattactaaaa-cacacagtag |
592 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49085568 |
tcatatcggacctgtaaaataaatttgagcaatgagcatctgaaatatctttaataatgtcagcctagacatgtttgagattactaaaaccacacagtag |
49085469 |
T |
|
| Q |
593 |
gagtttccaaacttactaaaaacactaataccatattgataaatcaactcaaattgttccctatga |
658 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49085468 |
gagtttccaaacttactaaaaacactgataccatattgataaatcaactcaaattgttccctatga |
49085403 |
T |
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