View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_68 (Length: 346)
Name: NF1172_high_68
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_68 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 8763045 - 8762708
Alignment:
| Q |
7 |
aagaatattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaatttacatcatatatttcaat |
106 |
Q |
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| T |
8763045 |
aagaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctaaatttacatcatatatttcaat |
8762946 |
T |
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| Q |
107 |
aatattataatatcatcattagcagactgaattataatgttgataatttttctgtctctaatttttgtcattatcttaactttctctagtatatcttgca |
206 |
Q |
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| T |
8762945 |
aatattataataacatcattagcagactgaatgataatgttgataatttttctgtctctaatttttgtcattatcttaactttctcgagtatatcttgca |
8762846 |
T |
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| Q |
207 |
aactctaatgctttggtatatataatcacaatacttgcagaagtatcgcatatttctgcgagatgttgcagagaaaggaatggttgaaggcatgtctcag |
306 |
Q |
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| T |
8762845 |
aactctaatgctttggt--atatgatcacaatacttgcagaagtatcgcatatttctgcgagatgttgccgagaaaggaatggttgaaggcatgtctcag |
8762748 |
T |
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| Q |
307 |
agagctctagaatcaaggtttgcatcaagtcttccgagtt |
346 |
Q |
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| T |
8762747 |
agagctctagaatcaaggtttgcatcaagtcttccgagtt |
8762708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 338
Target Start/End: Complemental strand, 8789524 - 8789199
Alignment:
| Q |
7 |
aagaatattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaatttacatcatatatttcaat |
106 |
Q |
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| T |
8789524 |
aagaaaattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaggtcacttacaggtttttcttctcaatttacatcatatatttcaat |
8789425 |
T |
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| Q |
107 |
aatattataatatcatcattagcagactgaattataatgttgataatttttctgtctctaatttttgtcattatcttaactttctctagtatatcttgca |
206 |
Q |
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| T |
8789424 |
aatattataata---tcattagcagactgaatgataatgttgataatttttctgtctctaatttttgtcgttgtcttaactttctctagtatatcttgca |
8789328 |
T |
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| Q |
207 |
aactctaatgctttggtatatataatcacaatacttgcagaagtatcgcatatttctgcgagatgttgcagagaaaggaatggttgaaggcatgtctcag |
306 |
Q |
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| T |
8789327 |
aactctaatgctttag--tatatgatcacaatacttgcagaagtatcgcatatttctgcgagatgttgcagagaaaggaatggttggaggc-tatctcac |
8789231 |
T |
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| Q |
307 |
agagctctagaatcaaggtttgcatcaagtct |
338 |
Q |
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| T |
8789230 |
agagctctaacatcaatgtttgcatcaggtct |
8789199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 8835 - 8918
Alignment:
| Q |
7 |
aagaatattctggagatcatgaatataccaaacttgaccagagaaaatgtagcaagtcacttacaggtttttcttctcaattta |
90 |
Q |
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||||| ||| ||||||| |||||| | |||||||| || |||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
8835 |
aagaaaattttggagataatgaatgttccaaacttaacaagagaaaatgtagccagtcatttacaggtttttcttctcaattta |
8918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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