View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_high_74 (Length: 325)
Name: NF1172_high_74
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_74 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 34890310 - 34890621
Alignment:
| Q |
1 |
agcttaataagtaatttcaagattgttaattannnnnnncatgtgctcttattgaacgtaannnnnnncttctagtacaattcatttaatgtaattcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
34890310 |
agcttaataagtaatttcaagattgttaattatttttttcatgtgctctcattgaacgtaatctttttcttctagtacaatccattgaatgtaattcaat |
34890409 |
T |
|
| Q |
101 |
ttggagggtatcaaattctagtacacctctcaacnnnnnnnntctagtaaaatcctttgtcgtctatttggttaaatacgcttcataaaaagtatgagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34890410 |
ttggagggtatcaaattctagtacacctctcaacaaaaaaaatctagtaaaatcctta-tcgtctatttggttaaatacgcttcataaaaagtatgagtt |
34890508 |
T |
|
| Q |
201 |
taacctttttattaaatgagctagacgaaactatattttaaatatgttaaggtgtagatccccatacgtgacttgttttattttcactcctactctttat |
300 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
34890509 |
taacctttttattagatgagctggaccaaactatattttaaatatgttaaggtgtaaatccccatacctgacttgttta-----cactcctactctttat |
34890603 |
T |
|
| Q |
301 |
agtttggatttcttctct |
318 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
34890604 |
agcttggatttcttctct |
34890621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University