View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_79 (Length: 315)
Name: NF1172_high_79
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_79 |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 54451727 - 54451619
Alignment:
| Q |
37 |
ataatatatgcaaggttcagagattaaatttcggccaccatnnnnnnnttaagtcataaaaaagatactccatcccatcataaatataatcatatattcc |
136 |
Q |
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| T |
54451727 |
ataatatatgtaaggttcaaagattaaattccggccaccataaaaaaattaagtcataaaaaagatactccatcccatcataaatataatcatatattcc |
54451628 |
T |
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| Q |
137 |
acttttatt |
145 |
Q |
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| T |
54451627 |
acttttatt |
54451619 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 28951422 - 28951469
Alignment:
| Q |
29 |
aacaatgtataatatatgcaaggttcagagattaaatttcggccacca |
76 |
Q |
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| T |
28951422 |
aacaatgcataatatatgcaaggttcagagtttaaacctcggccacca |
28951469 |
T |
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