View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_high_80 (Length: 311)

Name: NF1172_high_80
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_high_80
NF1172_high_80
[»] chr8 (6 HSPs)
chr8 (1-280)||(479163-479442)
chr8 (150-280)||(43319121-43319252)
chr8 (181-276)||(40589810-40589905)
chr8 (150-279)||(7126170-7126300)
chr8 (1-32)||(473937-473968)
chr8 (194-277)||(8452160-8452243)
[»] chr2 (2 HSPs)
chr2 (154-279)||(39829037-39829163)
chr2 (150-280)||(87304-87435)
[»] chr1 (1 HSPs)
chr1 (150-276)||(5608268-5608395)
[»] chr5 (2 HSPs)
chr5 (150-280)||(20203907-20204038)
chr5 (152-280)||(8387030-8387159)
[»] chr4 (8 HSPs)
chr4 (150-280)||(28538893-28539024)
chr4 (150-280)||(56062949-56063080)
chr4 (150-279)||(26423272-26423402)
chr4 (153-280)||(55733960-55734088)
chr4 (151-279)||(28425143-28425272)
chr4 (150-280)||(2063719-2063850)
chr4 (150-280)||(49950270-49950401)
chr4 (150-256)||(51260659-51260766)
[»] chr7 (2 HSPs)
chr7 (150-280)||(3746196-3746324)
chr7 (192-280)||(16096329-16096417)
[»] chr6 (1 HSPs)
chr6 (151-277)||(11732757-11732884)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 479442 - 479163
Alignment:
Q  1 catgtctaaacatcccatctttgctttccaaattacacacgatgcttatgctgtgtgaagagaataagaaatttattatatatattcttcgttcaattta 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  479442 catgtctaaacatcccatctttgctttccaaattatacacgatgcttatgttgtgtgaagagaagaagaaatttattatatatattctttgttcaattta 479343  T
Q  101 aatattactnnnnnnngtaacttatttagtagtctcaattatatcattctttttgggtgctaaactcggtaataaccc-aactttgtttggcggagtatt 199  Q
    |||||||||       ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  479342 aatattactaaaaaaagtaacttatttagtaatctcaattatatcattc-ttttgggtgctaaactcggtaataacccgagctttgcttggcggagtatt 479244  T
Q  200 tggacttcgcgtcagctacttttacatggttttaggtggacaattggacatgggcagcaggtcagcgttatgaatgatcca 280  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  479243 tggacttcgtgtcagctacttttacatggttctaggtggacaattggacatgggcagcaggtcagcgttataaatgatcca 479163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 43319252 - 43319121
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    ||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43319252 tttttgggtgctaaactcgataataacccgagctttgcttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 43319153  T
Q  249 atgggcagcaggtcagcgttatgaatgatcca 280  Q
    ||||| |||| |||||||||||||||||||||    
T  43319152 atgggaagcatgtcagcgttatgaatgatcca 43319121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 40589905 - 40589810
Alignment:
Q  181 ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggacatgggcagcaggtcagcgttatgaatga 276  Q
    ||||| ||||||||||||||||| || ||||||| ||||||||||||| | |||||||||||| ||| ||||||||||||||||||| ||||||||    
T  40589905 ctttgcttggcggagtatttggaatttgcgtcagatacttttacatggatgtaggtggacaataggaaatgggcagcaggtcagcgtgatgaatga 40589810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 279
Target Start/End: Original strand, 7126170 - 7126300
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    |||| |||||||||||||||||||||||| | ||||| |||||| |||||||||| |||||| ||  |||||||| |||| | ||| ||||| |||||||    
T  7126170 ttttagggtgctaaactcggtaataacccgagctttgcttggcgaagtatttggaattcgcgacatttacttttatatgggtgtagatggacgattggac 7126269  T
Q  249 atgggcagcaggtcagcgttatgaatgatcc 279  Q
     |||||| || ||||| || |||||||||||    
T  7126270 gtgggcaacatgtcagtgtgatgaatgatcc 7126300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 473968 - 473937
Alignment:
Q  1 catgtctaaacatcccatctttgctttccaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  473968 catgtctaaacatcccatctttgctttccaaa 473937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 277
Target Start/End: Complemental strand, 8452243 - 8452160
Alignment:
Q  194 agtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggacatgggcagcaggtcagcgttatgaatgat 277  Q
    ||||||| || |||| ||||| |||| ||| || | | |||||||||||||||| ||||||||||||| || || |||||||||    
T  8452243 agtatttagaattcgtgtcagttactattatattgatgtaggtggacaattggatatgggcagcaggttagtgtgatgaatgat 8452160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 39829163 - 39829037
Alignment:
Q  154 tgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggacatgg 252  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||||| |||||||| |||||| ||| ||||| |||||| ||||    
T  39829163 tgggtgctaaactcggtaataacccaagctttgcttggcggagtatttggaattcgtgtcagttacttttatatggttgtagatggacgattggagatgg 39829064  T
Q  253 gcagcaggtcagcgttatgaatgatcc 279  Q
    ||| ||||||||||| |||||||||||    
T  39829063 gcaacaggtcagcgtgatgaatgatcc 39829037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 87304 - 87435
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    |||||||||||||||||||||||||||   | ||||| |||||||||||| |||| |||||||||| ||||||||||||| | |||||| ||| |||||     
T  87304 tttttgggtgctaaactcggtaataacttgagctttgcttggcggagtatatggaattcgcgtcagatacttttacatggatgtaggtgaacagttggaa 87403  T
Q  249 atgggcagcaggtcagcgttatgaatgatcca 280  Q
    ||||||||||||| ||||| ||||||||||||    
T  87404 atgggcagcaggttagcgtgatgaatgatcca 87435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 5608268 - 5608395
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    ||||||||||||||||| ||||||||||  | ||||| |||| | |||||||||| |||||||||| ||||||||||||| | |||||||||| |||||     
T  5608268 tttttgggtgctaaacttggtaataacctgagctttgcttggagaagtatttggaattcgcgtcagatacttttacatggatgtaggtggacagttggaa 5608367  T
Q  249 atgggcagcaggtcagcgttatgaatga 276  Q
    ||||||||||||||||||| ||||||||    
T  5608368 atgggcagcaggtcagcgtgatgaatga 5608395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 20203907 - 20204038
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    ||||||||||||||||||||| ||||||| | ||||| |||| |||||||||||| |||||||||| |||||||| | || | |||||||||| |||||     
T  20203907 tttttgggtgctaaactcggttataacccgatctttgcttggaggagtatttggaattcgcgtcagttacttttatacggatgtaggtggacatttggaa 20204006  T
Q  249 atgggcagcaggtcagcgttatgaatgatcca 280  Q
    ||||||||||  ||||||| ||||||||||||    
T  20204007 atgggcagcaaatcagcgtgatgaatgatcca 20204038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 8387030 - 8387159
Alignment:
Q  152 tttgggtgctaaactcggtaataaccc-aactttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggacat 250  Q
    ||||||| ||||||||||  ||||||| ||||||| |||| | |||||||||| |||||||||  |||||||| |||| | ||| || ||||||||| ||    
T  8387030 tttgggtcctaaactcggatataacccgaactttgcttggagaagtatttggaattcgcgtcaattacttttatatggatgtagatgcacaattggaaat 8387129  T
Q  251 gggcagcaggtcagcgttatgaatgatcca 280  Q
    |||||||||||||| || ||||||||||||    
T  8387130 gggcagcaggtcagtgtgatgaatgatcca 8387159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 28539024 - 28538893
Alignment:
Q  150 tttttgggtgctaaactcggtaataaccc-aactttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    ||||||||||||| ||||||| ||||||| || |||| ||||||||||||||||| ||| | |||| |||||||| |||| | ||| |||||| |||||     
T  28539024 tttttgggtgctagactcggttataacccgaattttgcttggcggagtatttggaattcacatcagttacttttatatggatgtagatggacagttggaa 28538925  T
Q  249 atgggcagcaggtcagcgttatgaatgatcca 280  Q
    ||||||||||||||||||| ||||||||||||    
T  28538924 atgggcagcaggtcagcgtgatgaatgatcca 28538893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 56062949 - 56063080
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    ||||||||||||||||||||  ||||||| | ||||| |||  |||||||||||| |||||||||| |||||||| |||| | ||| |||||||||| |     
T  56062949 tttttgggtgctaaactcggatataacccgagctttgcttgaaggagtatttggaattcgcgtcagttacttttatatggatgtagatggacaattgaaa 56063048  T
Q  249 atgggcagcaggtcagcgttatgaatgatcca 280  Q
    ||||||||||||||||||| ||||||||||||    
T  56063049 atgggcagcaggtcagcgtgatgaatgatcca 56063080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 26423402 - 26423272
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaacttt-gtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    |||||||||||||||||  |||||||||||| ||| | ||||||||||||||||| |||||||||| |||||||| |||||| ||| ||||| ||||||     
T  26423402 tttttgggtgctaaacttagtaataacccaagttttggttggcggagtatttggaattcgcgtcagttacttttatatggttgtagatggacgattggag 26423303  T
Q  249 atgggcagcaggtcagcgttatgaatgatcc 279  Q
    ||||||| || ||||| || |||||||||||    
T  26423302 atgggcaacatgtcagtgtgatgaatgatcc 26423272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 280
Target Start/End: Original strand, 55733960 - 55734088
Alignment:
Q  153 ttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggacatg 251  Q
    |||||||||||||||||| ||||||  | | ||| ||||||||||||||||| ||| |||||| | |||||| |||| | |||||||||| ||||| |||    
T  55733960 ttgggtgctaaactcggttataacctgagcattgcttggcggagtatttggaattcacgtcagttgcttttatatggatgtaggtggacagttggaaatg 55734059  T
Q  252 ggcagcaggtcagcgttatgaatgatcca 280  Q
    |||||||||||||||| ||||||||||||    
T  55734060 ggcagcaggtcagcgtgatgaatgatcca 55734088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 28425143 - 28425272
Alignment:
Q  151 ttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggaca 249  Q
    ||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||| |||||||| || ||| ||| ||||| |||||| |    
T  28425143 ttttgagtgctaaactcggtaatagcccaagctttgcttggcggagtatttggaattcgcgtcagttacttttatatagttgtagatggacgattggaga 28425242  T
Q  250 tgggcagcaggtcagcgttatgaatgatcc 279  Q
    |||||| ||||| | | | |||||||||||    
T  28425243 tgggcaacaggttaacttgatgaatgatcc 28425272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 2063719 - 2063850
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    |||||||||||||||||| || ||||| | | ||||| |||  |||||||||||| ||| ||||||||||||||| |||| | ||||| |||||||| |     
T  2063719 tttttgggtgctaaactcagttataactcgagctttgcttgatggagtatttggaattcacgtcagctacttttatatggatgtaggtagacaattgaaa 2063818  T
Q  249 atgggcagcaggtcagcgttatgaatgatcca 280  Q
    |||||||||| |||||||| || |||||||||    
T  2063819 atgggcagcatgtcagcgtgataaatgatcca 2063850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 49950270 - 49950401
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    |||||||| |||||||| ||| ||||||| | ||||| ||| ||||||||||||| ||||||| |  |||||||||||   | ||||||||||||||||     
T  49950270 tttttgggagctaaactaggttataacccgagctttgcttgacggagtatttggaattcgcgtgaattacttttacataaatgtaggtggacaattggaa 49950369  T
Q  249 atgggcagcaggtcagcgttatgaatgatcca 280  Q
    ||||| |||| |||| ||| ||||||||||||    
T  49950370 atgggtagcatgtcaacgtgatgaatgatcca 49950401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 51260766 - 51260659
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    |||||||||||||||||||   ||||||| | ||||| |||| |||||||||||| ||||||| || |||||||| |||| | ||| ||||||||||||     
T  51260766 tttttgggtgctaaactcgaatataacccgagctttgcttggaggagtatttggaattcgcgtaagttacttttatatggatgtagatggacaattggaa 51260667  T
Q  249 atgggcag 256  Q
    ||||||||    
T  51260666 atgggcag 51260659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 3746196 - 3746324
Alignment:
Q  150 tttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggac 248  Q
    ||||| ||||||||||||||| ||||||| | ||||| ||||||||||||||||| |||||||||| |||||||| || ||| |||||||||||||||||    
T  3746196 ttttttggtgctaaactcggttataaccctagctttgcttggcggagtatttggaattcgcgtcagttacttttatattgttgtaggtggacaattggac 3746295  T
Q  249 atgggcagcaggtcagcgttatgaatgatcca 280  Q
    ||||    || |||||||| ||||||||||||    
T  3746296 atgg---tcatgtcagcgtgatgaatgatcca 3746324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 16096329 - 16096417
Alignment:
Q  192 ggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggacatgggcagcaggtcagcgttatgaatgatcca 280  Q
    |||||||||||| |||| | ||| |||| ||| |||| | |||||||||||||||| ||||  ||||||||||||| ||||| ||||||    
T  16096329 ggagtatttggaattcgtgccagttactgttatatggatgtaggtggacaattggaaatggatagcaggtcagcgtgatgaaagatcca 16096417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 277
Target Start/End: Complemental strand, 11732884 - 11732757
Alignment:
Q  151 ttttgggtgctaaactcggtaataacccaa-ctttgtttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggaca 249  Q
    |||||||||| ||||||||| ||||||| | ||||   ||| |||||||||||| |||||||||| || |||||||||| | |||||||| |||| || |    
T  11732884 ttttgggtgcaaaactcggttataacccgagcttttcctggtggagtatttggaattcgcgtcagttagttttacatggatgtaggtggataattagaaa 11732785  T
Q  250 tgggcagcaggtcagcgttatgaatgat 277  Q
    ||||||||| ||| |||| |||||||||    
T  11732784 tgggcagcatgtcggcgtgatgaatgat 11732757  T

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