View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_81 (Length: 303)
Name: NF1172_high_81
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_81 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 34566719 - 34566996
Alignment:
| Q |
13 |
catggctcttcctttctcgctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataattt-atatattgggagacact |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |
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| T |
34566719 |
catggctcttcctttctcgctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataattttatatcttgggagacatt |
34566818 |
T |
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| Q |
112 |
gccattgcaacttcttcaaatagcttacttttttctattattttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34566819 |
gccattgcaacttcttcaaatagcttacttttttctattattttgatgacttctttcaccattgtggtttttcccactccgcccatcccacagatgctaa |
34566918 |
T |
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| Q |
212 |
tcatatattgacttgatcatccttgagtttctctatgacctctttataatcttctcccaagacaataagctcttgatatt |
291 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34566919 |
tc--atattgacttgatcatccttgagtttctctatgacctctttataatcttctccctagacaataagctcttgatatt |
34566996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34292206 - 34292313
Alignment:
| Q |
1 |
ctcatgtaattgcatggctcttcctttctcgctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataatttatatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292206 |
ctcatgtaattgcatggctcttcctttctcgctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataatttatatat |
34292305 |
T |
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| Q |
101 |
tgggagac |
108 |
Q |
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|||||||| |
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| T |
34292306 |
tgggagac |
34292313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 34292330 - 34292448
Alignment:
| Q |
171 |
cattgtggtttttcccactccgcccatcccacaaatgctaatcatatattgacttgatcatccttgagtttctctatgacctctttataatcttctccca |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292330 |
cattgtggtttttcccactccgcccatcccacaaatgctaatcatat--tgacttgatcatccttgagtttctctatgacctctttataatcttctccct |
34292427 |
T |
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| Q |
271 |
agacaataagctcttgatatt |
291 |
Q |
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||||||||||||||||||||| |
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| T |
34292428 |
agacaataagctcttgatatt |
34292448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 34371341 - 34371280
Alignment:
| Q |
152 |
ttttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatc |
213 |
Q |
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| T |
34371341 |
ttttgatgagttctttcacaagtgtggttttccccactccacccatcccacaaatgccaatc |
34371280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 34555192 - 34555287
Alignment:
| Q |
153 |
tttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatcatatattgacttgatcatccttgagtttctctatgac |
250 |
Q |
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|||||||| |||||| |||| ||||||||||||||||| ||||| ||||| ||||| || | | |||| | ||||||||| |||||||||||||| |
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| T |
34555192 |
tttgatgatttcttttaccagagtggtttttcccactccacccattccacatatgcttat--tcttttgaacttatcatccttcagtttctctatgac |
34555287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 31 - 287
Target Start/End: Original strand, 15896412 - 15896668
Alignment:
| Q |
31 |
gctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataatttatatattgggagac-actgccattgcaacttcttca |
129 |
Q |
| |
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|||| ||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||| || ||| || || |||||||| ||||||| ||| |
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| T |
15896412 |
gctgtcctttttaaattccatgcccaaagtatcagcaatttgaatttggatcttctcataatttacatcttgagaaaccactgccatcacaacttcatca |
15896511 |
T |
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| Q |
130 |
aatagcttacttttttctattattttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatcatatattgacttgatc |
229 |
Q |
| |
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||||| || ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |
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| T |
15896512 |
aatagattgtttttttctattgttttgatgacttctttcaccagtgtggtttttcctactccgcccatcccacaaatgctaatc--attttgacttgatc |
15896609 |
T |
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| Q |
230 |
atccttgagtttctctatgacctct-ttataatcttctcccaagacaataagctcttga |
287 |
Q |
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||||||||| ||||||||||||||| ||||||| || || | |||||||| |||||||| |
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| T |
15896610 |
atccttgagcttctctatgacctctgttataattttttctctagacaataggctcttga |
15896668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 129604 - 129548
Alignment:
| Q |
153 |
tttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgct |
209 |
Q |
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|||||||| |||||| |||| |||||||||||||||||| ||||||||||| ||||| |
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| T |
129604 |
tttgatgagttctttaaccaatgtggtttttcccactccacccatcccacatatgct |
129548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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