View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_83 (Length: 302)
Name: NF1172_high_83
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_83 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 33 - 290
Target Start/End: Original strand, 34566740 - 34566996
Alignment:
| Q |
33 |
gacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataattt-atatattgggagacactgccattgcaacttcttcaaat |
131 |
Q |
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| T |
34566740 |
gacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataattttatatcttgggagacattgccattgcaacttcttcaaat |
34566839 |
T |
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| Q |
132 |
agcttacttttttctattattttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatcatatattgacttgatcatc |
231 |
Q |
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| T |
34566840 |
agcttacttttttctattattttgatgacttctttcaccattgtggtttttcccactccgcccatcccacagatgctaatc--atattgacttgatcatc |
34566937 |
T |
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| Q |
232 |
cttgagtttctctatgacctctttataatcttctcccaagacaataagctcttgatatt |
290 |
Q |
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| T |
34566938 |
cttgagtttctctatgacctctttataatcttctccctagacaataagctcttgatatt |
34566996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 34292330 - 34292448
Alignment:
| Q |
170 |
cattgtggtttttcccactccgcccatcccacaaatgctaatcatatattgacttgatcatccttgagtttctctatgacctctttataatcttctccca |
269 |
Q |
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| T |
34292330 |
cattgtggtttttcccactccgcccatcccacaaatgctaatcatat--tgacttgatcatccttgagtttctctatgacctctttataatcttctccct |
34292427 |
T |
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| Q |
270 |
agacaataagctcttgatatt |
290 |
Q |
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| T |
34292428 |
agacaataagctcttgatatt |
34292448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 34292206 - 34292313
Alignment:
| Q |
1 |
ctcatgtaattgcatggctcttcatctcactc-gacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataatttatatat |
99 |
Q |
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| T |
34292206 |
ctcatgtaattgcatggctcttcctttctcgctgacctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataatttatatat |
34292305 |
T |
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| Q |
100 |
tgggagac |
107 |
Q |
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|||||||| |
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| T |
34292306 |
tgggagac |
34292313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 34371341 - 34371280
Alignment:
| Q |
151 |
ttttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatc |
212 |
Q |
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| T |
34371341 |
ttttgatgagttctttcacaagtgtggttttccccactccacccatcccacaaatgccaatc |
34371280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 34555192 - 34555287
Alignment:
| Q |
152 |
tttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatcatatattgacttgatcatccttgagtttctctatgac |
249 |
Q |
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| T |
34555192 |
tttgatgatttcttttaccagagtggtttttcccactccacccattccacatatgcttat--tcttttgaacttatcatccttcagtttctctatgac |
34555287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 286
Target Start/End: Original strand, 15896417 - 15896668
Alignment:
| Q |
35 |
cctttttcaattccatgcccaaaacctctgcaatttgaatttggaccttctcataatttatatattgggagac-actgccattgcaacttcttcaaatag |
133 |
Q |
| |
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||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||| || ||| || || |||||||| ||||||| |||||||| |
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| T |
15896417 |
cctttttaaattccatgcccaaagtatcagcaatttgaatttggatcttctcataatttacatcttgagaaaccactgccatcacaacttcatcaaatag |
15896516 |
T |
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| Q |
134 |
cttacttttttctattattttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgctaatcatatattgacttgatcatcct |
233 |
Q |
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|| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
15896517 |
attgtttttttctattgttttgatgacttctttcaccagtgtggtttttcctactccgcccatcccacaaatgctaatc--attttgacttgatcatcct |
15896614 |
T |
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| Q |
234 |
tgagtttctctatgacctct-ttataatcttctcccaagacaataagctcttga |
286 |
Q |
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|||| ||||||||||||||| ||||||| || || | |||||||| |||||||| |
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| T |
15896615 |
tgagcttctctatgacctctgttataattttttctctagacaataggctcttga |
15896668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 129604 - 129548
Alignment:
| Q |
152 |
tttgatgacttctttcaccattgtggtttttcccactccgcccatcccacaaatgct |
208 |
Q |
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|||||||| |||||| |||| |||||||||||||||||| ||||||||||| ||||| |
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| T |
129604 |
tttgatgagttctttaaccaatgtggtttttcccactccacccatcccacatatgct |
129548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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