View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_high_9 (Length: 606)

Name: NF1172_high_9
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_high_9
NF1172_high_9
[»] chr2 (18 HSPs)
chr2 (1-495)||(39413113-39413598)
chr2 (272-495)||(39402307-39402531)
chr2 (72-266)||(39402143-39402332)
chr2 (223-302)||(39402207-39402288)
chr2 (7-51)||(39196600-39196644)
chr2 (1-47)||(39371169-39371215)
chr2 (1-51)||(39387578-39387628)
chr2 (1-51)||(39472848-39472898)
chr2 (6-49)||(39138696-39138739)
chr2 (1-47)||(44624834-44624880)
chr2 (1-46)||(39205826-39205871)
chr2 (8-49)||(39216707-39216748)
chr2 (1-49)||(39421267-39421315)
chr2 (1-40)||(39188838-39188877)
chr2 (10-49)||(39425626-39425665)
chr2 (10-49)||(39493532-39493571)
chr2 (16-49)||(39144646-39144679)
chr2 (1-49)||(39153109-39153157)
[»] chr5 (1 HSPs)
chr5 (1-51)||(33562337-33562387)
[»] chr7 (1 HSPs)
chr7 (6-49)||(19808953-19808996)
[»] chr8 (2 HSPs)
chr8 (5-49)||(45343015-45343059)
chr8 (1-47)||(44730167-44730213)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 39413113 - 39413598
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgcttcttttacacaatgtttgtcatttggtgagtaattaatttgattatagaattcat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| | |||||||||    
T  39413113 ttttctttcaagttagctttcaaatcaagtgctagcttcaatgcttcttttacacaaggtttgttatttggtgattaattaatttgataacagaattcat 39413212  T
Q  101 attcatgaacacacaaatggtgcataagtactgaattacaatttacaaagatatctaaaataagcacattgttagtgtatcagtaccaaagtaagcacgt 200  Q
    |||||| |||||||||||||||| ||||||||| |||||||       |||||||||||||| ||||||| ||||||||| ||||||||| ||||||| |    
T  39413213 attcataaacacacaaatggtgcttaagtactgcattacaa-------agatatctaaaatatgcacattattagtgtattagtaccaaaataagcacat 39413305  T
Q  201 cattggttcataagtacataatttacaaagatgaccaaaataagcacattactagtgcattagtaccaaaataagcacatcattggtgcataagtactta 300  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39413306 cattggtgcataagtacataatttacaaagaaaaccaaaataagcacattactagtgcattactaccaaaataagcacatcattggtgcataagtactta 39413405  T
Q  301 acaaacagacatatccaaaataagcacattctttggtacataagtgtcatattacaagatcataaagtcaacccttaacaacaaatgccctgagtgctgc 400  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||    
T  39413406 acaaacagacat--ccaaaataagcacattccttggtacataagtgtcatattacaaggtcgtaaagttaatccttaacaacaaatgccctgagtgctgc 39413503  T
Q  401 catgcaaagtccaatctttggattaattgtttcttgagtcagctcaccatctctaccataatttccatcaccattatctgccacattcatctcac 495  Q
    ||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||    
T  39413504 catacaaagtccgatctttggattaattgtttcttgagtcggctcaccatctctaccacaactttcatcaccattatctgccacattcatctcac 39413598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 272 - 495
Target Start/End: Original strand, 39402307 - 39402531
Alignment:
Q  272 taagcacatcattggtgcataagtacttaacaaacagaca-tatccaaaataagcacattctttggtacataagtgtcatattacaagatcataaagtca 370  Q
    ||||||||| | | |||||||||||| ||||||||||| | |||||||||||||||||||| || ||| |||||| ||||||||||||||||||||||||    
T  39402307 taagcacattactagtgcataagtacgtaacaaacagaaaatatccaaaataagcacattccttagtatataagtatcatattacaagatcataaagtca 39402406  T
Q  371 acccttaacaacaaatgccctgagtgctgccatgcaaagtccaatctttggattaattgtttcttgagtcagctcaccatctctaccataatttccatca 470  Q
    | ||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||||||     
T  39402407 atccttaacaacaaatgccttgagtgttgccatacaaagtccaatctttggattaattatttcttgagttaactcaccatctctaccacaatttccatct 39402506  T
Q  471 ccattatctgccacattcatctcac 495  Q
    |||||||||||||||||||||||||    
T  39402507 ccattatctgccacattcatctcac 39402531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 72 - 266
Target Start/End: Original strand, 39402143 - 39402332
Alignment:
Q  72 tgagtaattaatttgattatagaattcatattcatgaacacacaaatggtgcataagtactgaattacaatttacaaagatatctaaaataagcacattg 171  Q
    ||||||||||||||||  |  || || |||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||     
T  39402143 tgagtaattaatttgagaaatgattttatattcataaacacacaaatggtgcataagtactgaattacaa-------agatatctaaaataagcacatta 39402235  T
Q  172 ttagtgt--atcagtaccaaagtaagcacgtcattggttcataagtacataatttacaaagatgaccaaaataagcacattactagtgcattagtac 266  Q
    |||||||  || ||||||||| ||||||| |||||||  ||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||    
T  39402236 ttagtgtgtattagtaccaaaataagcacatcattggggcataagtacataacttacaaagatgaccatagtaagcacattactagtgcataagtac 39402332  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 39402207 - 39402288
Alignment:
Q  223 ttacaaagatgaccaaaataagcacattactagtgc--attagtaccaaaataagcacatcattggtgcataagtacttaac 302  Q
    ||||||||||  | ||||||||||||||| |||||   |||||||||||||||||||||||||||| |||||||||| ||||    
T  39402207 ttacaaagatatctaaaataagcacattattagtgtgtattagtaccaaaataagcacatcattggggcataagtacataac 39402288  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 39196600 - 39196644
Alignment:
Q  7 ttcatgttagctttcaaatcaagtgctagcttcaatgcttctttt 51  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  39196600 ttcatgttagctttcaaatcaaatgctagcttcaatgcttctttt 39196644  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39371215 - 39371169
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgcttc 47  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  39371215 ttttctttcatgttggctttcatatcaagtgctagcttcaatgcttc 39371169  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39387578 - 39387628
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgcttctttt 51  Q
    |||||||||||||||||||| |||||| | |||||||||||||||||||||    
T  39387578 ttttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttt 39387628  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39472848 - 39472898
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgcttctttt 51  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  39472848 ttttctttcatgttaactttcaaatcaagtgcgagcttcaatgcgtctttt 39472898  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 39138739 - 39138696
Alignment:
Q  6 tttcatgttagctttcaaatcaagtgctagcttcaatgcttctt 49  Q
    ||||||||||||||||| || |||||||||||||||||||||||    
T  39138739 tttcatgttagctttcagattaagtgctagcttcaatgcttctt 39138696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44624880 - 44624834
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgcttc 47  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||    
T  44624880 ttttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 44624834  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39205826 - 39205871
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgctt 46  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||||    
T  39205826 ttttctttcatcttagctttcaagtcaaatgctagcttcaatgctt 39205871  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 39216748 - 39216707
Alignment:
Q  8 tcatgttagctttcaaatcaagtgctagcttcaatgcttctt 49  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  39216748 tcatgttagatttcaaatcaaatgctagcttcaatgcttctt 39216707  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39421267 - 39421315
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgcttctt 49  Q
    ||||||| ||| ||||||||||||||||| || ||||||||||||||||    
T  39421267 ttttcttccatattagctttcaaatcaagagcgagcttcaatgcttctt 39421315  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39188838 - 39188877
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttca 40  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  39188838 ttttctttcatgttagcttttaaatcaagtgctagtttca 39188877  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 39425626 - 39425665
Alignment:
Q  10 atgttagctttcaaatcaagtgctagcttcaatgcttctt 49  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  39425626 atgttagctttcaaatcaagtgctaacttcattgcttctt 39425665  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 39493532 - 39493571
Alignment:
Q  10 atgttagctttcaaatcaagtgctagcttcaatgcttctt 49  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  39493532 atgttagctttcatatcaagtgctagcttcattgcttctt 39493571  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 39144679 - 39144646
Alignment:
Q  16 gctttcaaatcaagtgctagcttcaatgcttctt 49  Q
    ||||||||||||||||||||||||| ||||||||    
T  39144679 gctttcaaatcaagtgctagcttcattgcttctt 39144646  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39153157 - 39153109
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgcttctt 49  Q
    |||||||| || ||||||||||||||| |||| || |||||||||||||    
T  39153157 ttttcttttattttagctttcaaatcatgtgcgagtttcaatgcttctt 39153109  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33562387 - 33562337
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgcttctttt 51  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33562387 ttttctttcatgttagctttcaaatcaaatgctagcttcaatgcttctttt 33562337  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 19808996 - 19808953
Alignment:
Q  6 tttcatgttagctttcaaatcaagtgctagcttcaatgcttctt 49  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  19808996 tttcatgttagctttcaaatcaagtgctagcttcaatgtttctt 19808953  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 45343059 - 45343015
Alignment:
Q  5 ctttcatgttagctttcaaatcaagtgctagcttcaatgcttctt 49  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||    
T  45343059 ctttcacgttagctttcaactcaagtgctagcttgaatgcttctt 45343015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44730213 - 44730167
Alignment:
Q  1 ttttctttcatgttagctttcaaatcaagtgctagcttcaatgcttc 47  Q
    |||||||| |||||||||||||| ||| ||||||||||||| |||||    
T  44730213 ttttcttttatgttagctttcaactcatgtgctagcttcaaagcttc 44730167  T

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