View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_1 (Length: 778)
Name: NF1172_low_1
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 113 - 599
Target Start/End: Original strand, 7635684 - 7636146
Alignment:
| Q |
113 |
taagctagaatcgtgagaagttgcatccgtctccctcttgaaagttcctctttaggcatctaaaaa-ttgaagagacacactttttaaatcgaaatgaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
7635684 |
taagctagaatcgtgagaagttgcatccgtctccctcttgaaagttcctctttaggcatccaaaaaattgaagagacac--tttttaaatcgaa-tgaat |
7635780 |
T |
|
| Q |
212 |
cgatttaaaaaatatctcaactaatcaataaagtgtcgaacgacaacaattgtcgtttgttggatatatgcctagataagggaaggaaatggaccccact |
311 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
7635781 |
cgatttaaaaaatatctcaactaaccaataaagtgtcgaacgaca---------------------tatgcctagataagggaaggaaatgaaccccact |
7635859 |
T |
|
| Q |
312 |
ttacaattgagaaacaaagatgtgaggatcatgaaagaatcgacaacattaacccccatcaatttgctcttataagataaattaacttaagccctggaat |
411 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7635860 |
ttacaattgagaaataaagatgcgaggatcatgaaagaatcgacaacattaacgtctatcaatttgctcttataagataaattaacttaagccctggaat |
7635959 |
T |
|
| Q |
412 |
taattgaaaccacctaaggattaccttcatacatcataggttctcaacacaagcttcaacaataaataagtactaacaacatattgtaaatgagaaatca |
511 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
7635960 |
caattaaaaccacctaaggattaccttcatacatcataggttctcaacacaagcttcaacaataaataagtactaacgatatattgtaaatgagaaatca |
7636059 |
T |
|
| Q |
512 |
caacctctggtttggcaatggtgggttgttgtcttattttatttgtct----cgtatcagcaatgctttatttttaacaacatggatctctc |
599 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7636060 |
caacctc-----tggcaatggtgggttgttgttttgttttatttgtctcgtacgtatcaacaatgctttatttttaacaacatggatctctc |
7636146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 7635057 - 7635123
Alignment:
| Q |
55 |
tcataagaaattgtagctgatttcaggtactatatgggccaaacctacattggcacattaagctaga |
121 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7635057 |
tcataagaaattgtagttgatttcaggtactatatgggccaaacctacattggcacattaagctaga |
7635123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 670 - 757
Target Start/End: Original strand, 7636232 - 7636320
Alignment:
| Q |
670 |
tgtggttatgtttttctaggttttgcaggtgtgttttggttgccgaccgagggattgtggtgg-gttttttgggtttgtcgcttcaata |
757 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| |||||||||| || |||||||||| |
|
|
| T |
7636232 |
tgtggttctgtttttctaggttttgcgggtgtgttttggttgtagaccgaggggttgtggtggttttttttgggtatgccgcttcaata |
7636320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 34292147 - 34292199
Alignment:
| Q |
6 |
agaatatcccacacatcatcaaggacaattagaacctttttatcttttctcat |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34292147 |
agaatatcccacacatcatcaaggacaattagaacctttttatcttttctcat |
34292199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 34566642 - 34566694
Alignment:
| Q |
6 |
agaatatcccacacatcatcaaggacaattagaacctttttatcttttctcat |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34566642 |
agaatatcccacacatcatcaaggacaattagaacctttttatcttttctcat |
34566694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University