View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_100 (Length: 315)
Name: NF1172_low_100
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 10124301 - 10124484
Alignment:
| Q |
38 |
tagctgttgcttttgttgctagggtcggttcctttcatataatgtagctggagtgaatatggacaaatgttatcatgaagctcatatgccatcaccatca |
137 |
Q |
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| T |
10124301 |
tagcagttgcttttgttgctagggtcggttcctttcatataatgtagctggagtgaatatggacaaatgttatcatgaagctcatattccatcaccatca |
10124400 |
T |
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| Q |
138 |
aaacgattaactaattgataaaaaatttgtgcagtatatatcaatggtttaaactaactatgtagattattttccttctttttt |
221 |
Q |
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| T |
10124401 |
aaacgattaactaattgatagaaaatttgtgcagtatatatcaatggtttaaactaactatgtagattattttccttctttttt |
10124484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 8762420 - 8762350
Alignment:
| Q |
216 |
ttttttcaagcaaaaaactcattcaatgatggtgcttcctctagcttttcatcatatagaggtgaacaagg |
286 |
Q |
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| T |
8762420 |
ttttttcaagcaaaaaactcattcaatgatggtgcttccactagcttttcatcatatagaggtgaacaagg |
8762350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 8788951 - 8788881
Alignment:
| Q |
216 |
ttttttcaagcaaaaaactcattcaatgatggtgcttcctctagcttttcatcatatagaggtgaacaagg |
286 |
Q |
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|||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8788951 |
ttttttcaagcaaaaacctcattccatgatggtgcttccactagcttttcatcatatagaggtgaacaagg |
8788881 |
T |
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