View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_101 (Length: 314)

Name: NF1172_low_101
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_101
NF1172_low_101
[»] chr5 (3 HSPs)
chr5 (11-314)||(41722654-41722957)
chr5 (15-245)||(34359437-34359667)
chr5 (237-314)||(41718154-41718231)
[»] chr4 (4 HSPs)
chr4 (11-244)||(48697661-48697894)
chr4 (11-244)||(30946023-30946256)
chr4 (11-254)||(42270147-42270390)
chr4 (18-151)||(2003134-2003267)
[»] chr8 (3 HSPs)
chr8 (11-254)||(9439921-9440164)
chr8 (11-151)||(24594424-24594564)
chr8 (210-247)||(24594367-24594404)
[»] chr3 (4 HSPs)
chr3 (11-254)||(54545389-54545632)
chr3 (11-257)||(5819102-5819348)
chr3 (11-151)||(42589192-42589332)
chr3 (210-247)||(42589352-42589389)
[»] chr6 (8 HSPs)
chr6 (11-257)||(26976720-26976966)
chr6 (11-254)||(27874539-27874782)
chr6 (11-242)||(18967312-18967543)
chr6 (129-245)||(21966493-21966604)
chr6 (18-151)||(1472398-1472531)
chr6 (185-245)||(30968569-30968629)
chr6 (14-111)||(21965628-21965725)
chr6 (210-247)||(1472341-1472378)
[»] chr2 (3 HSPs)
chr2 (11-246)||(829723-829958)
chr2 (11-246)||(28715317-28715550)
chr2 (18-247)||(13840763-13840995)
[»] scaffold0074 (1 HSPs)
scaffold0074 (11-242)||(27877-28108)
[»] chr7 (5 HSPs)
chr7 (23-242)||(2323956-2324175)
chr7 (18-151)||(7504696-7504829)
chr7 (48-249)||(22510198-22510398)
chr7 (21-150)||(37957033-37957162)
chr7 (210-247)||(7504639-7504676)
[»] chr1 (2 HSPs)
chr1 (12-112)||(34973726-34973826)
chr1 (143-244)||(41413422-41413523)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 41722654 - 41722957
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722654 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 41722753  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722754 aagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 41722853  T
Q  211 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722854 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgt 41722953  T
Q  311 ttga 314  Q
    ||||    
T  41722954 ttga 41722957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 34359437 - 34359667
Alignment:
Q  15 ggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagc 114  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  34359437 ggcgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggatatgcaaaagattcacaccaatgataacctagcggatgtaatgacaaagc 34359536  T
Q  115 cgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcaca 214  Q
    |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||    
T  34359537 cgatcaacgctgacaagtttatatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagatactttgaatgctcaca 34359636  T
Q  215 aaagtgactttaagtgggagattgtgaacat 245  Q
    |||||||||||||||||||||||||||||||    
T  34359637 aaagtgactttaagtgggagattgtgaacat 34359667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 41718154 - 41718231
Alignment:
Q  237 tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718154 tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttga 41718231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 48697894 - 48697661
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697894 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 48697795  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||  ||||    
T  48697794 aagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagct 48697695  T
Q  211 cacaaaagtgactttaagtgggagattgtgaaca 244  Q
    ||||||||||||||||||||||||||||||||||    
T  48697694 cacaaaagtgactttaagtgggagattgtgaaca 48697661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 30946256 - 30946023
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946256 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 30946157  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||||||  ||||    
T  30946156 aagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaaccgaagtcggtaaggtagagagattttgagagct 30946057  T
Q  211 cacaaaagtgactttaagtgggagattgtgaaca 244  Q
    ||||||||||||||||||||||||| ||||||||    
T  30946056 cacaaaagtgactttaagtgggagactgtgaaca 30946023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 42270147 - 42270390
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||    
T  42270147 cataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgaca 42270246  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    ||| ||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |  ||    
T  42270247 aagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatact 42270346  T
Q  211 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42270347 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 42270390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 2003134 - 2003267
Alignment:
Q  18 gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga 117  Q
    |||||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||||| | |    
T  2003134 gttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaa 2003233  T
Q  118 tcaacactgataagtttgtatggtgtcgatcctc 151  Q
    ||||   ||| || |||  |||||||||||||||    
T  2003234 tcaatgttgacaaatttacatggtgtcgatcctc 2003267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 9440164 - 9439921
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||    
T  9440164 cataggcattcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgaca 9440065  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    ||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |  ||    
T  9440064 aagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagactttgaatact 9439965  T
Q  211 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9439964 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 9439921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 24594564 - 24594424
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    |||||| |||||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||    
T  24594564 cataggtgttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgaca 24594465  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctc 151  Q
    ||| | |||||  |||| || |||  ||||||| |||||||    
T  24594464 aagtcaatcaatgctgacaaatttacatggtgtagatcctc 24594424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 24594404 - 24594367
Alignment:
Q  210 tcacaaaagtgactttaagtgggagattgtgaacatgt 247  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  24594404 tcacaaaagtgactttaagtgggagattgtgaagatgt 24594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 54545389 - 54545632
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    |||||||||||||||||||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  54545389 cataggcgttcaatatcattttattcgagaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgtaatgaca 54545488  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  |||| | |||    
T  54545489 aagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattggaaacatagcaactgaagttggcaaggtagagaggctttgaatgct 54545588  T
Q  211 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54545589 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 54545632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 5819348 - 5819102
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||    
T  5819348 cataggcgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggatatgcaaaagattcacactaatgataacctagcagttgtaatgaca 5819249  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||| | |||    
T  5819248 aagccgatcaacactgacaagtttatatggcgtcgatcctcgtatggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgct 5819149  T
Q  211 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat 257  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  5819148 cacaaaagtaactttaagtgggagattgtgaacatgtgtgaacacat 5819102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 42589192 - 42589332
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    |||||| |||||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| || ||| |||||||| | ||||||    
T  42589192 cataggtgttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatattatgaca 42589291  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctc 151  Q
    ||| | |||||  |||| || |||  ||||||| |||||||    
T  42589292 aagtcaatcaatgctgacaaatttacatggtgtagatcctc 42589332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 42589352 - 42589389
Alignment:
Q  210 tcacaaaagtgactttaagtgggagattgtgaacatgt 247  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42589352 tcacaaaagtgactttaagtgggagattgtgaagatgt 42589389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 26976966 - 26976720
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  26976966 cataggtgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggatatgcaaaagattcacactaatgataacctagcagatgtaatgaca 26976867  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||| | |||    
T  26976866 aagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgct 26976767  T
Q  211 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26976766 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat 26976720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 27874782 - 27874539
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||    
T  27874782 cataggcattcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgaca 27874683  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    ||| ||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |  ||    
T  27874682 aagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatact 27874583  T
Q  211 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27874582 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 27874539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 18967312 - 18967543
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    |||||||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18967312 cataggcgttaaatatcattttgttcgacaagtagtggaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtgatgaca 18967411  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    || || |||||  |||| |||||| |||||||||||||||| |||||||||||| |||| |||||||  || | || |||||||||||||||||||||||    
T  18967412 aaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggcctattgaaaacatagcaacatgaatgggtaaggtagagagattttggaagct 18967511  T
Q  211 cacaaaagtgactttaagtgggagattgtgaa 242  Q
    | |||||||  |||||||||||||||||||||    
T  18967512 cgcaaaagtagctttaagtgggagattgtgaa 18967543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 21966493 - 21966604
Alignment:
Q  129 aagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaact-ggagttggcaaggtagagagattttggaagctcacaaaagtgactttaa 227  Q
    ||||||||||||||||||||||||||||      | ||||||||||||   |||||||||||||||||||||||||| || || ||||||||| || |||    
T  21966493 aagtttgtatggtgtcgatcctcgtatg------ttgaaacgtagcaataaggagttggcaaggtagagagattttgaaatcttacaaaagtggctgtaa 21966586  T
Q  228 gtgggagattgtgaacat 245  Q
    |||||| |||||||||||    
T  21966587 gtgggatattgtgaacat 21966604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 1472531 - 1472398
Alignment:
Q  18 gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga 117  Q
    |||||||| ||||||||||| |||||||||||| |  | ||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||||| | |    
T  1472531 gttcaataccattttgttcgagaagtagtagagaaaaggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaa 1472432  T
Q  118 tcaacactgataagtttgtatggtgtcgatcctc 151  Q
    ||||  |||| || |||  |||||||||||||||    
T  1472431 tcaatgctgacaaatttacatggtgtcgatcctc 1472398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 30968569 - 30968629
Alignment:
Q  185 ggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacat 245  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  30968569 ggcaaggtagagagattttgagtgctcacaaaagtgactttaagtgggagattgtgaacat 30968629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 21965628 - 21965725
Alignment:
Q  14 aggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaa 111  Q
    ||||||||||||| |||||||| | ||||||||  ||||  |||| ||||| ||||||||   ||||||||||||||| |||| ||||||||||||||    
T  21965628 aggcgttcaatattattttgtttgagaagtagtgaaggaatgaagggtggatatgcagaatgctcacaccaatgataacctagaagatgtaatgacaa 21965725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 1472378 - 1472341
Alignment:
Q  210 tcacaaaagtgactttaagtgggagattgtgaacatgt 247  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  1472378 tcacaaaagtgactttaagtgggagattgtgaagatgt 1472341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 829723 - 829958
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| ||||||||||||| |||||||| ||||||||||||||||||    
T  829723 cataggcgttcaatatcattttgttcgagaagtagtagaggaaggaagcgtggatatgtagaagattcacactaatgataacctagcagatgtaatgaca 829822  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |||    
T  829823 aagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattggaaacatagcaactggagttggcaaggtagagagactttgaatgct 829922  T
Q  211 cacaaaagtgactttaagtgggagattgtgaacatg 246  Q
    |||||||||  |||||||||||| ||||||||||||    
T  829923 cacaaaagtagctttaagtgggatattgtgaacatg 829958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 28715317 - 28715550
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    |||||| |||||||||||||||||||| | ||| || ||||||||| ||||| | ||||| |||||||||||||||||||| ||||||||||||||||||    
T  28715317 cataggtgttcaatatcattttgttcgagtagt-gtggaggaggga-gtgtgaatatgcataagattcacaccaatgataacctagcagatgtaatgaca 28715414  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    ||| |||||||  |||| |||||| ||| |||||||||||| |||||||||||| ||| |||||||| | ||||||| |||||||||||||||| |  ||    
T  28715415 aagtcgatcaatgctgacaagtttctatagtgtcgatcctcatatggcctattgaaaatgtagcaacggaagttggcgaggtagagagattttgaattct 28715514  T
Q  211 cacaaaagtgactttaagtgggagattgtgaacatg 246  Q
     | ||| ||  |||||||||||||||||||||||||    
T  28715515 aaaaaatgtagctttaagtgggagattgtgaacatg 28715550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 13840995 - 13840763
Alignment:
Q  18 gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga 117  Q
    |||||||||||||||||||   ||||||| || || |||||| ||||  ||||||||||||| || | |||||| ||| | |||||  ||||||| ||||    
T  13840995 gttcaatatcattttgttcaa-aagtagtcgacgaaggaagtatggatgtgcagaagattcagacaagtgataacctaacggatgtggtgacaaaaccga 13840897  T
Q  118 tcaacactgataagtttgtatggtgtcgatcct----cgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcac 213  Q
    ||||  || |||||||||||||| |||||||||     ||||| |||||||||||| |||||||  |||||||||||| ||||| ||||| |||||||||    
T  13840896 tcaatgctaataagtttgtatggcgtcgatcctgggaagtatgacctattggaaacatagcaacaagagttggcaaggcagagaaattttagaagctcac 13840797  T
Q  214 aaaagtgactttaagtgggagattgtgaacatgt 247  Q
    ||||||   |||||||| |||||||| |||||||    
T  13840796 aaaagtagatttaagtgagagattgtaaacatgt 13840763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 28108 - 27877
Alignment:
Q  11 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 110  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||    
T  28108 cataggcgttcaatatcattttgttcgagaagtagtggaggagggaagtgtggacatgcagaagattcacaccaatgataatctagtagatgtgattaca 28009  T
Q  111 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 210  Q
    || || |||||  |||| |||||| |||||||||||||||| |||||||||||||||||||||||||  || | ||||||||| ||||||||||||||||    
T  28008 aaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggcctattggaaacgtagcaacatgaatgggcaaggtaaagagattttggaagct 27909  T
Q  211 cacaaaagtgactttaagtgggagattgtgaa 242  Q
    | |||||||  |||||||||||||||||||||    
T  27908 cgcaaaagtagctttaagtgggagattgtgaa 27877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 2324175 - 2323956
Alignment:
Q  23 atatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaac 122  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||  ||||||||||| ||||||||||| |||||     
T  2324175 atatcattttgttcgagaagtagtaaaggagggaagtgtggatatgcagaagatccacaccaatgataccctagcagatgtgatgacaaagccaatcaat 2324076  T
Q  123 actgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgac 222  Q
     ||   |||||| ||||||||||||| |||||||| |||||||||||||||||||  || | |||||||||||||||||||||||||||||||||||| |    
T  2324075 gctaccaagtttatatggtgtcgatcatcgtatggactattggaaacgtagcaacatgaatgggcaaggtagagagattttggaagctcacaaaagtggc 2323976  T
Q  223 tttaagtgggagattgtgaa 242  Q
    ||||||||||||||||||||    
T  2323975 tttaagtgggagattgtgaa 2323956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 7504829 - 7504696
Alignment:
Q  18 gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga 117  Q
    |||||||| ||||||||||| ||||| |||||| | || ||||| || ||||| || ||||||||||| || ||| |||||||||| ||||||||| | |    
T  7504829 gttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcaaaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaa 7504730  T
Q  118 tcaacactgataagtttgtatggtgtcgatcctc 151  Q
    |||| ||||| || |||  |||||||||||||||    
T  7504729 tcaatactgacaaatttacatggtgtcgatcctc 7504696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 22510198 - 22510398
Alignment:
Q  48 gaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga-tcaacactgataagtttgtatggtgtcga 146  Q
    |||||||||  |||||| |||| ||||||||| ||  ||||||| | ||||||||| |||| |||| | | |||| | |||||||||| ||||||||| |    
T  22510198 gaggagggacatgtggatatgccgaagattcaaactgatgataaccaagcagatgtgatgaaaaagtctaatcaatattgataagtttatatggtgtcaa 22510297  T
Q  147 tcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatg 246  Q
    |||   | |||||||||  |||| ||| ||| ||||||||||||||||||| |||||| |||||| ||||| |  |||||| |  ||||| |||||||||    
T  22510298 tccctctgtggcctattcaaaacatagaaacaggagttggcaaggtagagatattttgaaagctcccaaaaatagctttaatt--gagatagtgaacatg 22510395  T
Q  247 tgt 249  Q
    |||    
T  22510396 tgt 22510398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 37957033 - 37957162
Alignment:
Q  21 caatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatca 120  Q
    |||||||||| |||| |||||||||||||||| |||||||||||||||||  |||||||||  || |||  |||||||  ||| ||||||||| | || |    
T  37957033 caatatcattatgtttgcgaagtagtagaggaaggaagtgtggacatgcaatagattcacaataaagattgtctagcaagtgtgatgacaaagtcaatta 37957132  T
Q  121 acactgataagtttgtatggtgtcgatcct 150  Q
    |   |||||||||| |||| ||||||||||    
T  37957133 atggtgataagtttatatgatgtcgatcct 37957162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 7504676 - 7504639
Alignment:
Q  210 tcacaaaagtgactttaagtgggagattgtgaacatgt 247  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  7504676 tcacaaaagtaactttaagtgggagattgtgaagatgt 7504639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 34973726 - 34973826
Alignment:
Q  12 ataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaa 111  Q
    |||||| || ||||||||||| || | |||||||| || ||| |||||||||| |||| |||||||||||| |||||||| |||  |||||| | |||||    
T  34973726 ataggcatttaatatcattttatttgagaagtagtggaagagagaagtgtggatatgctgaagattcacactaatgataacctaaaagatgtgacgacaa 34973825  T
Q  112 a 112  Q
    |    
T  34973826 a 34973826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 41413523 - 41413422
Alignment:
Q  143 tcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa 242  Q
    ||||| ||||| ||| ||||| ||||| |||||||  || | ||||||| ||||| |||||| |||||| |||||||   ||||| ||| ||||||||||    
T  41413523 tcgattctcgtttggtctattagaaacatagcaacaagaatgggcaaggcagagatattttgaaagctcgcaaaagtagttttaaatggaagattgtgaa 41413424  T
Q  243 ca 244  Q
    ||    
T  41413423 ca 41413422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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