View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_103 (Length: 310)
Name: NF1172_low_103
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_103 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 2463034 - 2463350
Alignment:
| Q |
9 |
caacaatatctcattgtggaagtgaaaaagaacttataactctatcaaaatatgaa-------------acaacattcatgaaatgaccactgactagtt |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2463034 |
caacaatatctcattgtggaagtgaaaaagaacttataactctatcaaaatatgaattgaaccgctgtaacaacattcatgaaatgaccactgactagtt |
2463133 |
T |
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| Q |
96 |
ttacatcaaaacttgagaaaagatatatagattttggcatatagtaagatgcattacctgaaagcaaataaatgaaaaatttcatctttatgaagaaata |
195 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2463134 |
ttacatcacaacttgagaaaagatatatagattatggcatatagtaagatgcattacctgaaagcaaataaatgaaaaatttcatctttatgaagaaata |
2463233 |
T |
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| Q |
196 |
actaaatagtatataaagcataatatgtaaaaaccaactaacaatcc--nnnnnnnnaccacccttgaatggaatgctcctccagattcctgcatgtaat |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |
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| T |
2463234 |
actaaatagtatataaagcataatatgtaaaaaccaactaacaatccttttttttttaccacccttgaatggaatgctgctccagattcctgcatggtat |
2463333 |
T |
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| Q |
294 |
tatcaatcctctccttt |
310 |
Q |
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|||| |||||||||||| |
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| T |
2463334 |
tatctatcctctccttt |
2463350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 2485834 - 2486021
Alignment:
| Q |
9 |
caacaatatctcattgtggaagtgaaaaagaacttataactctatcaaaatatgaa-------------acaacattcatgaaatgaccactgactagtt |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
2485834 |
caacaatatctcattgtggaagtgaaaaagaacttataactctatcaaaatatgaattgaaccgctgtaacaacattcatgaactgaccactgactagtt |
2485933 |
T |
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| Q |
96 |
ttacatcaaaacttgagaaaagatatatagattttggcatatagtaagatgcattacctgaaagcaaataaatgaaaaatttcatctt |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2485934 |
ttacatcaaaacttgagaaaagatatatagattttggcatatagtaagatgcattacctgaaagcaaataaatgaaaaatttcatctt |
2486021 |
T |
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