View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_104 (Length: 308)
Name: NF1172_low_104
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 99 - 270
Target Start/End: Original strand, 3482036 - 3482207
Alignment:
| Q |
99 |
catgtgcattaagaggtcaaatatgacaaaaatgtaagcaagcatgtgcattaagattattatatgtatactagttgtttattaatggaaactccacttt |
198 |
Q |
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| T |
3482036 |
catgtgcattaagaggtcaaatatgacaaaaatgtaagcaagcatgtgcattaagattattatatgtatactagttgtttattaatggaaactccacttt |
3482135 |
T |
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| Q |
199 |
tgaagctatttatggtagcagaaattgcataccaaccaaagtgaacatacaaagaaattgaaactatataac |
270 |
Q |
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| T |
3482136 |
tgaagctatttatggtagcaggaattgcataccaaccaaagtgaacatacaaagaaattgaaactatataac |
3482207 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3481936 - 3481997
Alignment:
| Q |
1 |
agtactacaaaggagaaagacagt----agagagacagagagaagacagcatatgcatgcat |
58 |
Q |
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| T |
3481936 |
agtactacaaaggagaaagacagtagagagagagagagagagaagacagcatatgcatgcat |
3481997 |
T |
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