View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_106 (Length: 304)
Name: NF1172_low_106
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_106 |
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| [»] scaffold0051 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 43037533 - 43037831
Alignment:
| Q |
1 |
cactcacacaattcacttcttgtgccatcagatacaacagaacccaacgacgaagcagatccacagcaactgttcttcatcgacgacgaagaatcatatc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43037533 |
cactcacacaattcacttcttgtgccatcagatccaacagaacccaacgacgaagcagatccacagcaactgttcttcatcgacgacgaagaatcatatc |
43037632 |
T |
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| Q |
101 |
caggatccttaattttattnnnnnnntgaagaattgaaacattattttgccgtggctgttctaagttattctcagtagaaacactttcacccaatctagt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43037633 |
caggatccttaattttattaaaaaaatgaagaattgaaacattattttgccgtggctgttctaagttattctcagtagaaacactttcacccaatctagt |
43037732 |
T |
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| Q |
201 |
aacaacaataggtgatgtgttggttacagaagaagaataatctcttcccatcaatgtcggagagtttgaagcgatttctgttgctggagtataatctac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43037733 |
aacaacaataggtgatgtgttggttacagaagaagaataatctcttcccatcaatgtcggagagtttgaagcgatttctgttgctggagtagaatctac |
43037831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 45542684 - 45542467
Alignment:
| Q |
4 |
tcacacaattcacttcttgtgccatcagatacaacagaacccaacgacgaagcagatccacagcaactgttcttcatcgacgacgaagaatcatatccag |
103 |
Q |
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||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||| | ||||||| ||| |
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| T |
45542684 |
tcacacaattcacttcttg--ccatcagaaacaacagaatccgacgacgaagcagatccacagctactgttcttcatcgacga---ataatcataccca- |
45542591 |
T |
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| Q |
104 |
gatccttaattttattnnnnnnntgaagaattgaaacattattttgccgtggctgttctaagttattctcagtagaaacactttcaccca----atctag |
199 |
Q |
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|||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
45542590 |
--------atttta---aagaaatgaagaattgaaacattattttgcggtgactgttctaagttattctcagtagaaacactttcatccaatctatctag |
45542502 |
T |
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| Q |
200 |
taacaacaataggtgatgtgttggttacagaagaa |
234 |
Q |
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|||||||| |||||||||||||||||| ||||||| |
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| T |
45542501 |
taacaacattaggtgatgtgttggttatagaagaa |
45542467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 22578 - 22660
Alignment:
| Q |
4 |
tcacacaattcacttcttgtgccatcagatacaacagaacccaacgacgaagcagatccacagcaactgttcttcatcgacga |
86 |
Q |
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| T |
22578 |
tcacacaattcacttcttttgccatcagaaacaacagaatccgacgacgaagcagatccacagctactgttcttcatcgacga |
22660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 38940 - 39037
Alignment:
| Q |
141 |
attattttgccgtggctgttctaagttattctcagtagaaacactttcaccca----atctagtaacaacaataggtgatgtgttggttacagaagaa |
234 |
Q |
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|||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |
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| T |
38940 |
attattttgcggtgactgttctaagttattttcagtagaaacactttcacccaatctatctagtaacaacattaggtgatgtgttggttatagaagaa |
39037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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