View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_11 (Length: 597)
Name: NF1172_low_11
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 30 - 527
Target Start/End: Complemental strand, 51804311 - 51803814
Alignment:
| Q |
30 |
atgttgtggcggctaagaggctttggagtcgaagttcgaaggattcttcgccagaagatgcattatttgtggacaaggcattgaaagctgaggtggaaac |
129 |
Q |
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| T |
51804311 |
atgttgtggcggttaagaggctttggagtcgaagttcgaaggattcttcgccagaagatgcattatttgtggacaaggcattgaaagctgaggtggaaac |
51804212 |
T |
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| Q |
130 |
acttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagtttggattgtagcttgttggtttatgagtatatgccaaatggtact |
229 |
Q |
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| T |
51804211 |
acttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagtttggattgtagcttgttggtttatgagtatatgccaaatggtact |
51804112 |
T |
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| Q |
230 |
ttgtatgattctcttcataagggttggattcatttggattggcctacaaggtataggattgcacttggaattgctcagggtgttgcataccttcaccatg |
329 |
Q |
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| T |
51804111 |
ttgtatgattctcttcacaagggttggattcatttggattggcctacaaggtataggattgcacttggaattgctcagggtgttgcataccttcaccatg |
51804012 |
T |
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| Q |
330 |
atttggtttttcctattatccatagagatattaagtcaacaaatattctcttggatgaagattaccatcctaaggttgcagattttgggattgctaaggt |
429 |
Q |
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| T |
51804011 |
atttggtttttcctattatccatagagatattaagtcaacaaatattctcttggatgaagattaccatcctaaggttgcagattttgggattgctaaggt |
51803912 |
T |
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| Q |
430 |
tttgcaggcaagaggagcaaaggattccacaaccacggttattgctggaacttatggttacctagccccaggtaaataaattctcaatctaacctatt |
527 |
Q |
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| T |
51803911 |
tttgcaggcaagaggagcaaaggattccacaaccacggtcattgctggaacttatggttacctagccccaggtaaataaattctcaatttaacctatt |
51803814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 82 - 336
Target Start/End: Complemental strand, 36578764 - 36578512
Alignment:
| Q |
82 |
agaagatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttgg-aagcataagacacaagaacattgttaagttgta---ttgttgctt |
177 |
Q |
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||||||| |||||||| ||||||||| |||| || ||||| || |||||||| ||| |||| |||||||||||| ||| || | ||||||||| |
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| T |
36578764 |
agaagataaattatttgcggacaaggcgttgagggcagaggtagagacacttgggaagtataaaacacaagaacatgtttatcttattctgttgttgctt |
36578665 |
T |
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| Q |
178 |
ctcaagtttggattgtagcttgttggttt----atgagtatatgccaaatggtactttgtatgattctcttcataagggttggattcatttggattggcc |
273 |
Q |
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| T |
36578664 |
ctcaattttggattgtagcttgttggtttgtttatgagtacatgccaaatggtactttatatgattcacttcacaag----------agttggatcgacc |
36578575 |
T |
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| Q |
274 |
tacaaggtataggattgcacttggaattgctcagggtgttgcataccttcaccatgatttggt |
336 |
Q |
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| T |
36578574 |
tactaagtatagaatcgaacttggaattgattagggtcttgcataccttcaccatgatttggt |
36578512 |
T |
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