View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_110 (Length: 300)

Name: NF1172_low_110
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_110
NF1172_low_110
[»] chr6 (7 HSPs)
chr6 (80-248)||(28636182-28636350)
chr6 (190-241)||(25468849-25468900)
chr6 (193-244)||(30250724-30250775)
chr6 (188-243)||(22534217-22534272)
chr6 (193-237)||(5120968-5121012)
chr6 (193-241)||(31073637-31073685)
chr6 (193-237)||(31574224-31574268)
[»] chr7 (17 HSPs)
chr7 (184-245)||(5184422-5184483)
chr7 (188-241)||(24929803-24929856)
chr7 (188-245)||(27245201-27245258)
chr7 (193-245)||(7732491-7732543)
chr7 (191-241)||(26026318-26026368)
chr7 (193-245)||(39388759-39388811)
chr7 (193-245)||(48247590-48247642)
chr7 (190-245)||(787277-787332)
chr7 (182-245)||(11973893-11973956)
chr7 (193-243)||(34595265-34595315)
chr7 (196-245)||(35161293-35161342)
chr7 (193-245)||(5334310-5334362)
chr7 (193-245)||(16081790-16081842)
chr7 (193-245)||(25637200-25637252)
chr7 (192-244)||(25637690-25637742)
chr7 (217-245)||(26048437-26048465)
chr7 (188-240)||(28687591-28687643)
[»] chr5 (10 HSPs)
chr5 (193-245)||(32697717-32697769)
chr5 (98-144)||(38997611-38997657)
chr5 (192-241)||(14340905-14340954)
chr5 (96-137)||(28804033-28804074)
chr5 (193-240)||(16753066-16753113)
chr5 (103-144)||(37497497-37497538)
chr5 (193-241)||(10721789-10721837)
chr5 (192-244)||(14340400-14340452)
chr5 (193-245)||(15115583-15115635)
chr5 (193-245)||(18150215-18150267)
[»] chr4 (26 HSPs)
chr4 (193-245)||(55677449-55677501)
chr4 (191-241)||(14439829-14439879)
chr4 (193-245)||(34789874-34789926)
chr4 (193-245)||(46737146-46737198)
chr4 (193-245)||(54440574-54440626)
chr4 (178-245)||(6617153-6617220)
chr4 (193-244)||(21034729-21034780)
chr4 (177-244)||(28165991-28166058)
chr4 (188-235)||(40160591-40160638)
chr4 (193-241)||(12593518-12593566)
chr4 (193-245)||(19528872-19528924)
chr4 (193-245)||(33689832-33689884)
chr4 (193-245)||(41608906-41608958)
chr4 (197-245)||(45838554-45838602)
chr4 (185-244)||(21034230-21034289)
chr4 (184-243)||(44219369-44219428)
chr4 (190-236)||(45839049-45839095)
chr4 (187-241)||(48295037-48295091)
chr4 (190-243)||(16690936-16690989)
chr4 (193-245)||(24851957-24852009)
chr4 (193-245)||(26974736-26974788)
chr4 (188-244)||(28465573-28465629)
chr4 (188-244)||(34789380-34789436)
chr4 (193-241)||(34807119-34807167)
chr4 (193-241)||(35644057-35644105)
chr4 (193-241)||(56077819-56077867)
[»] chr2 (21 HSPs)
chr2 (193-248)||(25336088-25336143)
chr2 (188-245)||(6949935-6949992)
chr2 (185-241)||(63459-63515)
chr2 (193-245)||(38007953-38008005)
chr2 (193-238)||(33920615-33920660)
chr2 (188-245)||(42192238-42192295)
chr2 (193-245)||(16953425-16953477)
chr2 (193-245)||(20128228-20128280)
chr2 (193-245)||(32418162-32418214)
chr2 (193-241)||(43160012-43160060)
chr2 (190-245)||(15550673-15550728)
chr2 (194-241)||(16175845-16175892)
chr2 (187-241)||(4355752-4355806)
chr2 (191-237)||(9330294-9330340)
chr2 (103-148)||(18160738-18160783)
chr2 (193-245)||(62960-63012)
chr2 (193-245)||(649530-649582)
chr2 (193-245)||(4808882-4808934)
chr2 (193-245)||(11540129-11540181)
chr2 (193-245)||(42192734-42192786)
chr2 (217-245)||(43216200-43216228)
[»] chr8 (11 HSPs)
chr8 (191-241)||(18050086-18050136)
chr8 (193-241)||(599535-599583)
chr8 (193-245)||(15255856-15255908)
chr8 (193-245)||(16578111-16578163)
chr8 (193-245)||(28254917-28254969)
chr8 (183-245)||(9796719-9796781)
chr8 (193-245)||(6115602-6115654)
chr8 (190-244)||(18428254-18428308)
chr8 (193-245)||(34799574-34799626)
chr8 (189-245)||(35694369-35694425)
chr8 (193-245)||(42035775-42035827)
[»] chr3 (24 HSPs)
chr3 (185-243)||(26837355-26837413)
chr3 (188-241)||(49952041-49952094)
chr3 (185-245)||(16689353-16689413)
chr3 (193-244)||(51827960-51828011)
chr3 (180-241)||(51829035-51829096)
chr3 (193-245)||(40275096-40275148)
chr3 (193-245)||(41998719-41998771)
chr3 (193-245)||(49720374-49720426)
chr3 (193-245)||(52237308-52237360)
chr3 (193-244)||(30513725-30513776)
chr3 (190-245)||(32730389-32730444)
chr3 (182-245)||(40275585-40275647)
chr3 (188-235)||(43222388-43222435)
chr3 (193-239)||(14654686-14654732)
chr3 (190-244)||(49951546-49951600)
chr3 (192-245)||(22370598-22370651)
chr3 (190-243)||(25612469-25612522)
chr3 (184-241)||(27199696-27199753)
chr3 (193-238)||(39010078-39010123)
chr3 (188-241)||(40839147-40839200)
chr3 (193-241)||(16701287-16701335)
chr3 (193-241)||(46013425-46013473)
chr3 (193-241)||(49720856-49720904)
chr3 (193-245)||(52375822-52375874)
[»] chr1 (10 HSPs)
chr1 (188-244)||(23340181-23340237)
chr1 (193-245)||(29438933-29438985)
chr1 (193-245)||(44582060-44582112)
chr1 (80-137)||(31322265-31322323)
chr1 (188-238)||(37505565-37505615)
chr1 (193-245)||(10278551-10278603)
chr1 (193-241)||(16298685-16298733)
chr1 (85-144)||(31321316-31321376)
chr1 (190-241)||(37421160-37421211)
chr1 (189-244)||(37421437-37421492)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 28636182 - 28636350
Alignment:
Q  80 agcaaaaatggaggattgggtaaaagaaatggtgaaggtgtgagactaagatgaaaatggaggaaaaaatacatatatgaagaagatgaaataagcaata 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||     
T  28636182 agcaaaaatggaggattgggtaaaagaaatggtgaaggtgtgagactaagatgaaaatggaggaagaaatacatatatgaagaagatgaaataaccaatg 28636281  T
Q  180 tttttaaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctacttc 248  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  28636282 tttttaaattggcttaattacatttttggtcattgtattttgaccaactcacgaaattggtcttacttc 28636350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 25468849 - 25468900
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  25468849 ggtttaattacacttttggtccttacattttgaccaactcacgaaattggtc 25468900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 30250724 - 30250775
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    ||||||||| |||||||| ||  |||||||||||||||||||||||||||||    
T  30250724 ttaattacaattttggtccttgcattttgaccaactcacgaaattggtccta 30250775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 22534272 - 22534217
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcct 243  Q
    |||| ||||||||| |||||||| |  ||||||||||||||||||||| |||||||    
T  22534272 ttggcttaattacacttttggtcctcgtattttgaccaactcacgaaaatggtcct 22534217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 5121012 - 5120968
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaatt 237  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||    
T  5121012 ttaattacacttttggtccttgcattttgaccaactcacgaaatt 5120968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 31073685 - 31073637
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||||||| |||||||| ||  |||||||||| |||||||||||||||    
T  31073685 ttaattacacttttggtccttgcattttgaccagctcacgaaattggtc 31073637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 31574268 - 31574224
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaatt 237  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||    
T  31574268 ttaattacacttttggtccttgcattttgaccaactcacgaaatt 31574224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 5184422 - 5184483
Alignment:
Q  184 taaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  5184422 taaataggtttaattacatttttggtccttggattttgaccaactcacgaaattggtcctac 5184483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 24929856 - 24929803
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  24929856 ttggcttaattacatttttggtccttgcattttgaccaactcacgaaattggtc 24929803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 27245201 - 27245258
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||| ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  27245201 ttggcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctac 27245258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 7732491 - 7732543
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||||||||||||||| ||  ||||||| ||||||||||||||||||||||    
T  7732491 ttaattacatttttggtccttgcattttgatcaactcacgaaattggtcctac 7732543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 26026318 - 26026368
Alignment:
Q  191 gtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||||||||| |||||||| || ||||||||||| |||||||||||||||    
T  26026318 gtttaattacacttttggtccttgtattttgaccagctcacgaaattggtc 26026368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 39388811 - 39388759
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  |||||||||||||||||||||| |||||||    
T  39388811 ttaattacacttttggtccttgcattttgaccaactcacgaaatttgtcctac 39388759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 48247590 - 48247642
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||| ||||||||||||||||||||||    
T  48247590 ttaattacacttttggtccttgcattttgatcaactcacgaaattggtcctac 48247642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 787332 - 787277
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||||||||| |||||||  |  ||||||||||||||||||||| |||||||||    
T  787332 ggtttaattacacttttggtgctcgtattttgaccaactcacgaaaatggtcctac 787277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 11973956 - 11973893
Alignment:
Q  182 tttaaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||| | |||||||||||||||||||| ||  ||||||||||||  ||||||||||| ||||    
T  11973956 tttaaaatagtttaattacatttttggtccttgcattttgaccaacgtacgaaattggttctac 11973893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 34595315 - 34595265
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcct 243  Q
    ||||||||| |||||||| | | |||||||||||||||||||| |||||||    
T  34595315 ttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcct 34595265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 35161342 - 35161293
Alignment:
Q  196 attacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||| |||||||| ||  ||||||||||||||||| ||||||||||||    
T  35161342 attacacttttggtccttgcattttgaccaactcacggaattggtcctac 35161293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 5334362 - 5334310
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| | | |||||||||||||||||||| | |||||||    
T  5334362 ttaattacacttttggtcctcacattttgaccaactcacgaaaatagtcctac 5334310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 16081842 - 16081790
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||||||  ||||||| ||  ||||||||||||||||||||||| ||||||    
T  16081842 ttaattacacctttggtccttgcattttgaccaactcacgaaattgatcctac 16081790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 25637200 - 25637252
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  || |||||||||||| ||||||||||||||    
T  25637200 ttaattacacttttggtccttgcatattgaccaactcatgaaattggtcctac 25637252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 25637742 - 25637690
Alignment:
Q  192 tttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    |||||||||| |||||||| |   |||||||||||||||||||| ||||||||    
T  25637742 tttaattacacttttggtcctaccattttgaccaactcacgaaaatggtccta 25637690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 26048465 - 26048437
Alignment:
Q  217 ttttgaccaactcacgaaattggtcctac 245  Q
    |||||||||||||||||||||||||||||    
T  26048465 ttttgaccaactcacgaaattggtcctac 26048437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 28687591 - 28687643
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggt 240  Q
    |||| ||||||||| ||||||||||   |||||||||||||||||||| ||||    
T  28687591 ttggcttaattacacttttggtcatatcattttgaccaactcacgaaaatggt 28687643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 32697769 - 32697717
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  32697769 ttaattacacttttggtcattgcattttgaccaactcacgaaattggtcctac 32697717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 38997657 - 38997611
Alignment:
Q  98 ggtaaaagaaatggtgaaggtgtgagactaagatgaaaatggaggaa 144  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  38997657 ggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaa 38997611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 14340954 - 14340905
Alignment:
Q  192 tttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||||||||||||||||  ||  ||||||||||||||||||||||||||    
T  14340954 tttaattacatttttggtacttgcattttgaccaactcacgaaattggtc 14340905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 28804074 - 28804033
Alignment:
Q  96 tgggtaaaagaaatggtgaaggtgtgagactaagatgaaaat 137  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  28804074 tgggtagaagaaatggtgaaggtgtgcgactaagatgaaaat 28804033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 16753113 - 16753066
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggt 240  Q
    ||||||||||||||||||||   |||||||||||||||||||| ||||    
T  16753113 ttaattacatttttggtcatcgcattttgaccaactcacgaaaatggt 16753066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 37497538 - 37497497
Alignment:
Q  103 aagaaatggtgaaggtgtgagactaagatgaaaatggaggaa 144  Q
    ||||||||||||| |||||  |||||||||||||||||||||    
T  37497538 aagaaatggtgaaagtgtgcaactaagatgaaaatggaggaa 37497497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 10721789 - 10721837
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||||||||| | | |||||||||| ||||||||| |||||    
T  10721789 ttaattacatttttggtcctcacattttgaccagctcacgaaaatggtc 10721837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 14340400 - 14340452
Alignment:
Q  192 tttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    ||||||||||||||||||| |   ||||||| |||||||||||| ||||||||    
T  14340400 tttaattacatttttggtcctaccattttgatcaactcacgaaaatggtccta 14340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 15115635 - 15115583
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| ||||| || | | |||||||||||||||||||| |||||||||    
T  15115635 ttaattacacttttgatcctcacattttgaccaactcacgaaaatggtcctac 15115583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 18150267 - 18150215
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| || || || || ||||||||| |||||||||||||||||||||    
T  18150267 ttaattacacttgtgatccttgtattttgacaaactcacgaaattggtcctac 18150215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 55677501 - 55677449
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| || |||||||||||||||||||||||||||||||    
T  55677501 ttaattacacttttggtccttgtattttgaccaactcacgaaattggtcctac 55677449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 14439829 - 14439879
Alignment:
Q  191 gtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  14439829 gtttaattacatttttggtccttgcattttgaccaactcacgaaattggtc 14439879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 34789926 - 34789874
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  34789926 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctac 34789874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 46737198 - 46737146
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  46737198 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctac 46737146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 54440574 - 54440626
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  54440574 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctac 54440626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 6617220 - 6617153
Alignment:
Q  178 tatttttaaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||| |||| ||||||||||||||||||| |  ||  |||||||| |||||||||||||||||||||    
T  6617220 tatttataaaatggtttaattacatttttgctacttgcattttgactaactcacgaaattggtcctac 6617153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 21034780 - 21034729
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    ||||||||| |||||||| ||  |||||||||||||||||||||||||||||    
T  21034780 ttaattacaattttggtccttgcattttgaccaactcacgaaattggtccta 21034729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 28165991 - 28166058
Alignment:
Q  177 atatttttaaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    ||||| || ||| |||||||||| |||||||||| |  ||||||||||||||||||||| ||||||||    
T  28165991 atattatttaataggtttaattaaatttttggtcctactattttgaccaactcacgaaaatggtccta 28166058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 40160638 - 40160591
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaa 235  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  40160638 ttggtttaattacatttttggtccttgcattttgaccaactcacgaaa 40160591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 12593566 - 12593518
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||    
T  12593566 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtc 12593518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 19528872 - 19528924
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||| ||||||||||||||||||    
T  19528872 ttaattacacttttggtccttgcattttgaccaattcacgaaattggtcctac 19528924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 33689832 - 33689884
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  |||||||||||||||| |||||||||||||    
T  33689832 ttaattacacttttggtccttgcattttgaccaactcacaaaattggtcctac 33689884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 41608958 - 41608906
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| |   ||||||||||||||||||||||||||||||    
T  41608958 ttaattacacttttggtcctaccattttgaccaactcacgaaattggtcctac 41608906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 45838554 - 45838602
Alignment:
Q  197 ttacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||| |||||||| || |||||||||||||||||| ||||||||||||    
T  45838554 ttacacttttggtccttgtattttgaccaactcacgtaattggtcctac 45838602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 21034230 - 21034289
Alignment:
Q  185 aaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    ||||||| ||||||||| |||||||| |   |||||||||||||||||||| ||||||||    
T  21034230 aaattggcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtccta 21034289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 44219369 - 44219428
Alignment:
Q  184 taaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcct 243  Q
    |||||||  ||||||||| |||||||| |  |||||| ||||||||||||||||||||||    
T  44219369 taaattgacttaattacacttttggtcctcgtattttaaccaactcacgaaattggtcct 44219428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 45839095 - 45839049
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaat 236  Q
    |||||||||||| |||||||| |  ||||||||||||||||||||||    
T  45839095 ggtttaattacacttttggtcctactattttgaccaactcacgaaat 45839049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 48295091 - 48295037
Alignment:
Q  187 attggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||| ||||||||||||||||||||  | |||||| | ||||||||||||||||    
T  48295091 attggcttaattacatttttggtcatcgtgttttgatctactcacgaaattggtc 48295037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 16690936 - 16690989
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcct 243  Q
    ||||||||||||||||||||| || | |||||| | |||||||||| |||||||    
T  16690936 ggtttaattacatttttggtccttgtgttttgatctactcacgaaaatggtcct 16690989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 24852009 - 24851957
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||| | |||||||| ||  ||||||||||||||||||||||| ||||||    
T  24852009 ttaattatacttttggtccttgcattttgaccaactcacgaaattgatcctac 24851957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 26974788 - 26974736
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||||||||||||||| ||  |||||||  || ||||||||||||||||||    
T  26974788 ttaattacatttttggtccttgcattttgaataattcacgaaattggtcctac 26974736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 28465629 - 28465573
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    |||| ||||||||| |||||||| |   |||||||||||||||||||| ||||||||    
T  28465629 ttggcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtccta 28465573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 34789380 - 34789436
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    |||| ||||||||| |||||||| |   |||||||||||||||||||| ||||||||    
T  34789380 ttggcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtccta 34789436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 34807119 - 34807167
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||||||| |||||||| ||  ||||||| ||||||||||||||||||    
T  34807119 ttaattacacttttggtccttgcattttgatcaactcacgaaattggtc 34807167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 35644105 - 35644057
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||| ||||    
T  35644105 ttaattacacttttggtccttgcattttgaccaactcacgaaataggtc 35644057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 56077867 - 56077819
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||||||||| |   |||||||||||||||||||| |||||    
T  56077867 ttaattacatttttggtcctaccattttgaccaactcacgaaaatggtc 56077819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 25336143 - 25336088
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctacttc 248  Q
    ||||||||| |||||||| ||  |||||||||||||||||||||||||||||||||    
T  25336143 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacttc 25336088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 6949992 - 6949935
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||| ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  6949992 ttggcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctac 6949935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 63515 - 63459
Alignment:
Q  185 aaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||| |||||||||| |||||||||| || ||||||||||||||||||||| |||||    
T  63515 aaataggtttaattatatttttggtccttgtattttgaccaactcacgaaaatggtc 63459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 38007953 - 38008005
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  38007953 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctac 38008005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 33920615 - 33920660
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattg 238  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||    
T  33920615 ttaattacatttttggtccttgcattttgaccaactcacgaaattg 33920660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 42192238 - 42192295
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||| ||||||||| |||||||| | | |||||||||||||||||||| |||||||||    
T  42192238 ttggcttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctac 42192295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 16953477 - 16953425
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||||| ||||||||||||||    
T  16953477 ttaattacacttttggtccttgcattttgaccaactcatgaaattggtcctac 16953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 20128280 - 20128228
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||| ||||||||||||||||||||||||    
T  20128280 ttaattacacttttggtccttgcatttttaccaactcacgaaattggtcctac 20128228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 32418162 - 32418214
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| || ||||| ||  ||||||||||||||||||||||||||||||    
T  32418162 ttaattacacttatggtccttgcattttgaccaactcacgaaattggtcctac 32418214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 43160012 - 43160060
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||||||||| ||  ||||||| ||||||||||||||||||    
T  43160012 ttaattacatttttggtccttgcattttgatcaactcacgaaattggtc 43160060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 15550673 - 15550728
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||||||||| ||||| || ||  ||| ||||||||||||||||||||||||||    
T  15550673 ggtttaattacacttttgatccttgcattctgaccaactcacgaaattggtcctac 15550728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 16175892 - 16175845
Alignment:
Q  194 taattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||| |||||||| ||| ||||| ||||||||||||||||||||    
T  16175892 taattacacttttggtccttacatttttaccaactcacgaaattggtc 16175845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 4355752 - 4355806
Alignment:
Q  187 attggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||| ||||||||| |||||||| ||  ||||||||| ||||||||||||||||    
T  4355752 attggcttaattacacttttggtccttgcattttgacctactcacgaaattggtc 4355806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 9330340 - 9330294
Alignment:
Q  191 gtttaattacatttttggtcattatattttgaccaactcacgaaatt 237  Q
    ||||||||||| |||||||| ||  ||||||||||||||||||||||    
T  9330340 gtttaattacacttttggtccttgcattttgaccaactcacgaaatt 9330294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 18160738 - 18160783
Alignment:
Q  103 aagaaatggtgaaggtgtgagactaagatgaaaatggaggaaaaaa 148  Q
    |||||||||||||| |||| | ||||||||||||||| ||||||||    
T  18160738 aagaaatggtgaagatgtgcggctaagatgaaaatggtggaaaaaa 18160783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 62960 - 63012
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| || ||||| ||  |||||||||||||||||||| |||||||||    
T  62960 ttaattacacttatggtccttccattttgaccaactcacgaaaatggtcctac 63012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 649530 - 649582
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  || |||||||||| ||||||||||||||||    
T  649530 ttaattacacttttggtccttgcatcttgaccaacttacgaaattggtcctac 649582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 4808882 - 4808934
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||||||||||| ||  ||  ||||||||||||||||||||||| ||||||    
T  4808882 ttaattacatttttagttcttgcattttgaccaactcacgaaattgatcctac 4808934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 11540181 - 11540129
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||| | ||||||||||   |||||||||||||||||||| |||||||||    
T  11540181 ttaattatacttttggtcatcgcattttgaccaactcacgaaaatggtcctac 11540129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 42192786 - 42192734
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| |   |||||||||||||||||||| |||||||||    
T  42192786 ttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcctac 42192734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 43216228 - 43216200
Alignment:
Q  217 ttttgaccaactcacgaaattggtcctac 245  Q
    |||||||||||||||||||||||||||||    
T  43216228 ttttgaccaactcacgaaattggtcctac 43216200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 18050136 - 18050086
Alignment:
Q  191 gtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  18050136 gtttaattacatttttggtccttgcattttgaccaactcacgaaattggtc 18050086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 599535 - 599583
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  599535 ttaattacatttttggtccttgcattttgaccaactcacgaaattggtc 599583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 15255856 - 15255908
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  15255856 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctac 15255908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 16578111 - 16578163
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||||||||||||||  ||  ||||||||||||||||||||||||||||||    
T  16578111 ttaattacatttttggttcttgcattttgaccaactcacgaaattggtcctac 16578163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 28254969 - 28254917
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  28254969 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctac 28254917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 9796719 - 9796781
Alignment:
Q  183 ttaaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||| |||| ||||||||| |||||||| ||  |||||||||||||||| |||||||||||||    
T  9796719 ttaatttggcttaattacacttttggtccttgcattttgaccaactcacaaaattggtcctac 9796781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 6115654 - 6115602
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||| | |||||||| || ||||||||||||||| |||||||||||||||    
T  6115654 ttaattatacttttggtccttgtattttgaccaactcgcgaaattggtcctac 6115602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 18428308 - 18428254
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    |||||||||||| |||||||| |   |||||||||||||||||||| ||||||||    
T  18428308 ggtttaattacacttttggtcctaccattttgaccaactcacgaaaatggtccta 18428254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 34799626 - 34799574
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||| | ||||||||||||||||    
T  34799626 ttaattacacttttggtcctttcattttgaccaattaacgaaattggtcctac 34799574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 35694425 - 35694369
Alignment:
Q  189 tggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||||||| |||||||| ||  |||||||| ||||||| ||| |||||||||    
T  35694425 tggtttaattacacttttggtccttccattttgactaactcacaaaaatggtcctac 35694369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 42035775 - 42035827
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| | | |||||||||||||||||||| |||| ||||    
T  42035775 ttaattacacttttggtcctcacattttgaccaactcacgaaaatggttctac 42035827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 26837355 - 26837413
Alignment:
Q  185 aaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcct 243  Q
    |||| ||||||||||||||||||||| || ||||||| || ||||||||||||||||||    
T  26837355 aaataggtttaattacatttttggtccttgtattttggcctactcacgaaattggtcct 26837413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 49952094 - 49952041
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  49952094 ttggcttaattacatttttggtccttgcattttgaccaactcacgaaattggtc 49952041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 16689353 - 16689413
Alignment:
Q  185 aaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||| |||||||||||| |||||||| |   ||||||||||||||||||||||||||||||    
T  16689353 aaataggtttaattacagttttggtcctagcattttgaccaactcacgaaattggtcctac 16689413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 51827960 - 51828011
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    ||||||||| |||||||| ||  |||||||||||||||||||||||||||||    
T  51827960 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtccta 51828011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 51829096 - 51829035
Alignment:
Q  180 tttttaaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||||| |||| ||||||||| ||||||||||  |||||||| |||||||||||| |||||    
T  51829096 tttttaatttggcttaattacacttttggtcatactattttgatcaactcacgaaaatggtc 51829035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 40275096 - 40275148
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| | | |||||||||||||||||||| |||||||||    
T  40275096 ttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctac 40275148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 41998771 - 41998719
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||| ||||||||||||||||    
T  41998771 ttaattacacttttggtccttgcattttgaccaacttacgaaattggtcctac 41998719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 49720374 - 49720426
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| ||||| || ||  ||||||||||||||||||||||||||||||    
T  49720374 ttaattacacttttgatccttgcattttgaccaactcacgaaattggtcctac 49720426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 52237360 - 52237308
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| | | |||||||||||||||||||| |||||||||    
T  52237360 ttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctac 52237308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 30513725 - 30513776
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    |||||||||||||||||| ||  |||||||| ||||||||||| ||||||||    
T  30513725 ttaattacatttttggtccttgcattttgacaaactcacgaaaatggtccta 30513776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 32730389 - 32730444
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||||||||| |||||||| ||  ||||||||||||||  ||||||||||||||    
T  32730389 ggtttaattacacttttggtccttgcattttgaccaactcttgaaattggtcctac 32730444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 40275647 - 40275585
Alignment:
Q  182 tttaaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||| |||| ||||||||| |||||||| | | |||||||||||||||||||| |||||||||    
T  40275647 tttaatttggcttaattacacttttggtcctcacattttgaccaactcacgaaa-tggtcctac 40275585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 43222388 - 43222435
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaa 235  Q
    |||| |||||||| ||||||||||| | ||||||||||||||||||||    
T  43222388 ttggcttaattacgtttttggtcatcacattttgaccaactcacgaaa 43222435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 14654732 - 14654686
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattgg 239  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||    
T  14654732 ttaattacacttttggtccttgcattttgaccaactcacgaaattgg 14654686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 49951546 - 49951600
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    |||||||||||| |||||||| |   |||||||||||||||||||| ||||||||    
T  49951546 ggtttaattacacttttggtcctaccattttgaccaactcacgaaaatggtccta 49951600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 22370598 - 22370651
Alignment:
Q  192 tttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    |||||||||| |||||||| |   |||||||||||||||||||| |||||||||    
T  22370598 tttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcctac 22370651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 25612522 - 25612469
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaattggtcct 243  Q
    |||||||||||| |||||||| |  | |||||||| ||||||||||||||||||    
T  25612522 ggtttaattacacttttggtcctcgtgttttgacctactcacgaaattggtcct 25612469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 27199696 - 27199753
Alignment:
Q  184 taaattggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||| ||||||||||||||||||||| |   |||||||||| ||||||||| |||||    
T  27199696 taaataggtttaattacatttttggtcctcgcattttgaccagctcacgaaaatggtc 27199753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 39010078 - 39010123
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattg 238  Q
    |||||||||||||||||| ||  |||||||||||||||| ||||||    
T  39010078 ttaattacatttttggtccttgcattttgaccaactcacaaaattg 39010123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 40839200 - 40839147
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||||| |||||||| | | |||||||| ||||||||||| |||||    
T  40839200 ttggtttaattacacttttggtcctcacattttgacaaactcacgaaaatggtc 40839147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 16701335 - 16701287
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||||||||| |   |||||||||||||||||||| |||||    
T  16701335 ttaattacatttttggtcctaccattttgaccaactcacgaaaatggtc 16701287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 46013425 - 46013473
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||||||| ||||| || ||  ||||||||||||||||||||||||||    
T  46013425 ttaattacacttttgatccttgcattttgaccaactcacgaaattggtc 46013473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 49720904 - 49720856
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    ||||||||| |||||||| |  ||||||||||||||||||||| |||||    
T  49720904 ttaattacacttttggtcctactattttgaccaactcacgaaaatggtc 49720856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 52375874 - 52375822
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| |   |||||||||||||||||||| |||||||||    
T  52375874 ttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcctac 52375822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 23340181 - 23340237
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    |||| ||||||||| ||||| |||||  |||||||||||||||||||||||||||||    
T  23340181 ttggcttaattacacttttgatcattgcattttgaccaactcacgaaattggtccta 23340237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 29438933 - 29438985
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  29438933 ttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctac 29438985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 44582060 - 44582112
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||    
T  44582060 ttaattacacttttggtccttacattttgaccaactaacgaaattggtcctac 44582112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 31322265 - 31322323
Alignment:
Q  80 agcaaaaatggaggat-tgggtaaaagaaatggtgaaggtgtgagactaagatgaaaat 137  Q
    |||| ||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||    
T  31322265 agcagaaatggaggatatgggtagaagaaatggtgaaggtgtgcgactaagataaaaat 31322323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 37505615 - 37505565
Alignment:
Q  188 ttggtttaattacatttttggtcattatattttgaccaactcacgaaattg 238  Q
    |||| ||||||| |||||||||| || ||||||||||||||||||||||||    
T  37505615 ttggcttaattatatttttggtccttttattttgaccaactcacgaaattg 37505565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 10278551 - 10278603
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtcctac 245  Q
    ||||||||| |||||||| ||  ||||||||||||||||||||||| ||||||    
T  10278551 ttaattacacttttggtccttgcattttgaccaactcacgaaattgatcctac 10278603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 16298685 - 16298733
Alignment:
Q  193 ttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||||||| | ||  ||||||||||||||||||||||||||    
T  16298685 ttaattacatttttggcccttgcattttgaccaactcacgaaattggtc 16298733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 31321376 - 31321316
Alignment:
Q  85 aaatggaggat-tgggtaaaagaaatggtgaaggtgtgagactaagatgaaaatggaggaa 144  Q
    ||||||||||| |||||| | ||||||||||||||||| | ||||||||||||| ||||||    
T  31321376 aaatggaggatatgggtagacgaaatggtgaaggtgtgcggctaagatgaaaatagaggaa 31321316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 37421160 - 37421211
Alignment:
Q  190 ggtttaattacatttttggtcattatattttgaccaactcacgaaattggtc 241  Q
    |||||||||||| |||||||| ||  ||||||||||| ||||||||||||||    
T  37421160 ggtttaattacacttttggtctttgcattttgaccaattcacgaaattggtc 37421211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 37421492 - 37421437
Alignment:
Q  189 tggtttaattacatttttggtcattatattttgaccaactcacgaaattggtccta 244  Q
    ||||||||||||| |||| |||||   |||||||||||||||||||| ||||||||    
T  37421492 tggtttaattacacttttagtcataccattttgaccaactcacgaaaatggtccta 37421437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University