View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_114 (Length: 296)
Name: NF1172_low_114
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_114 |
 | |
|
| [»] scaffold0450 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 108 - 290
Target Start/End: Complemental strand, 33337266 - 33337084
Alignment:
| Q |
108 |
atctgggagggtttgtgtactcctaagttctaagttgaaattaatataataaggggaaattatgcatgcatatatactaggttggtaattggttggttgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33337266 |
atctgggagggtttgtgtactcctaagttctaagttgaaattaatataataaggggaaattatgcatgcatatatactaggttggtaattggttggttgt |
33337167 |
T |
|
| Q |
208 |
tcggatattaaaatctgatctaaagagttgactttgactggtggtttatgcgtgcgtaactcacaactacaccttcatttcag |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33337166 |
tcggatattaaaatctgatctaaagagttgactttgactggtggtttatgcgtgcgtaactcacaactacaccttcaattcag |
33337084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 8762350 - 8762434
Alignment:
| Q |
7 |
ccttgttcacctctatatgatgaaaagctagaggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaag |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8762350 |
ccttgttcacctctatatgatgaaaagctagtggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaag |
8762434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 8788881 - 8788965
Alignment:
| Q |
7 |
ccttgttcacctctatatgatgaaaagctagaggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaag |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8788881 |
ccttgttcacctctatatgatgaaaagctagtggaagcaccatcatggaatgaggtttttgcttgaaaaaatggaaggtttgaag |
8788965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 9554 - 9504
Alignment:
| Q |
40 |
gaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaa |
90 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||| || |||||||||| |
|
|
| T |
9554 |
gaagcaccatcattgaaggagtttttcgcctgaaaaactgaaaggtttgaa |
9504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University