View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_122 (Length: 285)

Name: NF1172_low_122
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_122
NF1172_low_122
[»] chr8 (5 HSPs)
chr8 (32-249)||(12930833-12931052)
chr8 (44-249)||(12935579-12935786)
chr8 (135-247)||(15588948-15589060)
chr8 (137-249)||(26504945-26505055)
chr8 (52-97)||(26504850-26504895)
[»] chr4 (9 HSPs)
chr4 (32-249)||(14174094-14174314)
chr4 (32-249)||(28611556-28611776)
chr4 (43-249)||(14178848-14179057)
chr4 (43-249)||(28606805-28607014)
chr4 (44-249)||(44161743-44161949)
chr4 (44-249)||(11104625-11104829)
chr4 (43-249)||(48826701-48826905)
chr4 (71-241)||(48708086-48708256)
chr4 (156-249)||(24726288-24726381)
[»] chr1 (1 HSPs)
chr1 (44-249)||(34907296-34907503)
[»] chr5 (5 HSPs)
chr5 (44-249)||(29106878-29107083)
chr5 (43-249)||(42910992-42911197)
chr5 (32-124)||(38994687-38994779)
chr5 (136-226)||(38997230-38997320)
chr5 (36-99)||(38997130-38997193)
[»] chr7 (7 HSPs)
chr7 (44-249)||(37040426-37040634)
chr7 (32-249)||(15290385-15290606)
chr7 (44-249)||(12099156-12099361)
chr7 (44-126)||(12084669-12084751)
chr7 (192-249)||(12082171-12082227)
chr7 (40-104)||(2757209-2757273)
chr7 (201-249)||(2757370-2757418)
[»] chr2 (1 HSPs)
chr2 (43-249)||(8539342-8539549)
[»] chr3 (2 HSPs)
chr3 (35-126)||(51302937-51303028)
chr3 (135-175)||(51302304-51302344)
[»] chr6 (2 HSPs)
chr6 (44-226)||(2100199-2100379)
chr6 (219-249)||(2100723-2100753)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 12931052 - 12930833
Alignment:
Q  32 tctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnn 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         
T  12931052 tctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataa 12930953  T
Q  132 nnn--tgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatatta 229  Q
         |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12930952 aaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatatta 12930853  T
Q  230 caatattctctccactctct 249  Q
    ||||||||||||||||||||    
T  12930852 caatattctctccactctct 12930833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 44 - 249
Target Start/End: Complemental strand, 12935786 - 12935579
Alignment:
Q  44 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||          |||||||    
T  12935786 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 12935687  T
Q  142 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 241  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935686 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 12935587  T
Q  242 cactctct 249  Q
    ||||||||    
T  12935586 cactctct 12935579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
Q  135 tgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaata 234  Q
    |||||| |||||||||   || ||||||||||| ||  ||| ||||||||| | |||||||||  ||||||||| |||| ||| ||| |||||||||| |    
T  15589060 tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca 15588961  T
Q  235 ttctctccactct 247  Q
    || ||||||||||    
T  15588960 ttttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 26504945 - 26505055
Alignment:
Q  137 aacaccaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 236  Q
    |||| |||||||||||||| || ||| ||||||| | ||| ||||  ||| | ||||||||| |||||||||| |||||| |||| ||||||||||||||    
T  26504945 aacatcaatatttaacgtg-aataccgtctaataacaaggcaaaac-cacagtacaaactccaaaaaatattcaactataataaaaaatattacaatatt 26505042  T
Q  237 ctctccactctct 249  Q
    || || |||||||    
T  26505043 ctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  52 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 97  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 14174314 - 14174094
Alignment:
Q  32 tctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnn 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||          
T  14174314 tctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataa 14174215  T
Q  132 nnn---tgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatatt 228  Q
          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14174214 aaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatatt 14174115  T
Q  229 acaatattctctccactctct 249  Q
    |||||||||||||||||||||    
T  14174114 acaatattctctccactctct 14174094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 28611556 - 28611776
Alignment:
Q  32 tctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnn 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         
T  28611556 tctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataa 28611655  T
Q  132 nnn---tgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatatt 228  Q
          ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28611656 aaaaaatgaacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatatt 28611755  T
Q  229 acaatattctctccactctct 249  Q
    |||||||||||||||||||||    
T  28611756 acaatattctctccactctct 28611776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 43 - 249
Target Start/End: Complemental strand, 14179057 - 14178848
Alignment:
Q  43 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||    
T  14179057 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaac 14178958  T
Q  140 accaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 239  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178957 accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 14178858  T
Q  240 tccactctct 249  Q
    ||||||||||    
T  14178857 tccactctct 14178848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 43 - 249
Target Start/End: Original strand, 28606805 - 28607014
Alignment:
Q  43 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           | |||    
T  28606805 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaac 28606904  T
Q  140 accaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 239  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606905 accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 28607004  T
Q  240 tccactctct 249  Q
    ||||||||||    
T  28607005 tccactctct 28607014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 44 - 249
Target Start/End: Complemental strand, 44161949 - 44161743
Alignment:
Q  44 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 44161850  T
Q  141 ccaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 240  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  44161849 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattaca--attctct 44161752  T
Q  241 ccactctct 249  Q
    |||||||||    
T  44161751 ccactctct 44161743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 44 - 249
Target Start/End: Complemental strand, 11104829 - 11104625
Alignment:
Q  44 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca 11104730  T
Q  144 atatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 243  Q
    ||||||||| | ||||| ||||||||| ||||||  ||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  11104729 atatttaacatagaaaatcctctaatatcgaggg-taaaccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca 11104631  T
Q  244 ctctct 249  Q
    ||||||    
T  11104630 ctctct 11104625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 249
Target Start/End: Original strand, 48826701 - 48826905
Alignment:
Q  43 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnnt-gaacac 141  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||||||||||||||          ||||||    
T  48826701 ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacac 48826798  T
Q  142 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 241  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  48826799 caatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggac-aactccgaaaaatattccactatattaaagaatattacaatattctctt 48826897  T
Q  242 cactctct 249  Q
    | ||||||    
T  48826898 cgctctct 48826905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 48708086 - 48708256
Alignment:
Q  71 tgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaata 170  Q
    |||||||||||||||||||||  |||||| |||| ||||| || ||||| ||| ||        | || ||||||||||||| || ||||| || |||||    
T  48708086 tgtaaattaaaattccaaaatataaaagaaattgaatcttacaacgcagtggtggcgataaaattaaataccaatatttaacatgaaaaactctataata 48708185  T
Q  171 ccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 241  Q
    |  || |||||| |||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  48708186 ctaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
Q  156 gaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 249  Q
    ||||||| ||||||| | ||||||||  |||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 44 - 249
Target Start/End: Complemental strand, 34907503 - 34907296
Alignment:
Q  44 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||    
T  34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 34907404  T
Q  142 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 241  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907403 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 34907304  T
Q  242 cactctct 249  Q
    ||||||||    
T  34907303 cactctct 34907296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 44 - 249
Target Start/End: Original strand, 29106878 - 29107083
Alignment:
Q  44 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 143  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca 29106977  T
Q  144 atatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 243  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29106978 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 29107077  T
Q  244 ctctct 249  Q
    ||||||    
T  29107078 ctctct 29107083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 43 - 249
Target Start/End: Original strand, 42910992 - 42911197
Alignment:
Q  43 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacc 142  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||| | |        ||||||||    
T  42910992 ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc 42911091  T
Q  143 aatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc 242  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  42911092 aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccg-aaaatattccactatatttaagaatattacaatattctctcc 42911190  T
Q  243 actctct 249  Q
    |||||||    
T  42911191 actctct 42911197  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 38994687 - 38994779
Alignment:
Q  32 tctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta 124  Q
    ||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| |||||  | |||||||||||||| |||||||||    
T  38994687 tctgataccacttgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
Q  136 gaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaata 226  Q
    ||||| |||||||| |||| ||||||||||||||| |||  ||||||  |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997230 gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 38997130 - 38997193
Alignment:
Q  36 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 99  Q
    |||| |||||||||| |||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  38997130 atactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaaga 38997193  T

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Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 44 - 249
Target Start/End: Original strand, 37040426 - 37040634
Alignment:
Q  44 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||           ||||||    
T  37040426 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 37040525  T
Q  141 ccaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 240  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37040526 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct 37040625  T
Q  241 ccactctct 249  Q
    |||||||||    
T  37040626 ccactctct 37040634  T

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Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 15290606 - 15290385
Alignment:
Q  32 tctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcnnnn 130  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||        
T  15290606 tctgataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgata 15290507  T
Q  131 nnnn---tgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatat 227  Q
           |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||| || |||||||||||| ||||||||    
T  15290506 aaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatat 15290407  T
Q  228 tacaatattctctccactctct 249  Q
    ||||||||||||||||||||||    
T  15290406 tacaatattctctccactctct 15290385  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 44 - 249
Target Start/End: Complemental strand, 12099361 - 12099156
Alignment:
Q  44 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 143  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || || ||||        |||| | ||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca 12099262  T
Q  144 atatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 243  Q
    |||||| ||||| |||||||||||||  ||| ||||||| || ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  12099261 atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca 12099162  T
Q  244 ctctct 249  Q
    ||||||    
T  12099161 ctctct 12099156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
Q  44 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 126  Q
    |||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| |||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc 12084669  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 12082227 - 12082171
Alignment:
Q  192 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 249  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctct 12082171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 2757209 - 2757273
Alignment:
Q  40 cacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattg 104  Q
    ||||||||| | || |||||||||   ||||||||||||||||||||||||| ||||||| ||||    
T  2757209 cacttgttgtgttcaacgagcttattacaagtgtaaattaaaattccaaaattcaaaagaaattg 2757273  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 2757370 - 2757418
Alignment:
Q  201 aaaatattccactatattaaagaatattacaatattctctccactctct 249  Q
    |||||||||||||||||| || |||||| || |||||||||||||||||    
T  2757370 aaaatattccactatatttaaaaatattgcactattctctccactctct 2757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 43 - 249
Target Start/End: Complemental strand, 8539549 - 8539342
Alignment:
Q  43 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn-tgaacac 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |         ||||||     
T  8539549 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacat 8539450  T
Q  142 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  8539449 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc 8539350  T
Q  242 cactctct 249  Q
    ||||||||    
T  8539349 cactctct 8539342  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 51303028 - 51302937
Alignment:
Q  35 gataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 126  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  51303028 gataccacttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 51302344 - 51302304
Alignment:
Q  135 tgaacaccaatatttaacgtggaaaaccctctaataccgag 175  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  51302344 tgaacaccaatatttaacgtggaaaaccctctaataccgag 51302304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
Q  44 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnntgaacacc 142  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || ||          |||||| |    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc 2100298  T
Q  143 aatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaaaatattccactatattaaagaata 226  Q
    ||||||||| |||||||||||| |||||  ||| ||||||   |||| ||||||||||||||||||||||||||||||||||||    
T  2100299 aatatttaaggtggaaaaccctttaataatgagcgaaaaa---cggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 249
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  219 aaagaatattacaatattctctccactctct 249  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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