View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_123 (Length: 283)
Name: NF1172_low_123
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_123 |
 | |
|
| [»] scaffold0350 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 15447532 - 15447596
Alignment:
| Q |
42 |
tcataggacgatagtttaaagaacctgtacaaagttggcttacgacttttgccatatgtttatgg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15447532 |
tcataggacgatagtttaaagaacctgtacaaagttggcttacgacttttgccatatgtttatgg |
15447596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 15447620 - 15447681
Alignment:
| Q |
123 |
gtttaagggaagttacattaaccaaacacaagatataaataaatgtttagtgcgtcggtgta |
184 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
15447620 |
gtttaagggaagtttcattaaccaaacacaacatctaaataaatgtttagtgcgtcggtgta |
15447681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0350 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 1319 - 1284
Alignment:
| Q |
200 |
gtggtgaccggagtttgaactccagaccttacatat |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1319 |
gtggtggccggagtttgaactccagaccttacatat |
1284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 6038265 - 6038300
Alignment:
| Q |
200 |
gtggtgaccggagtttgaactccagaccttacatat |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6038265 |
gtggtggccggagtttgaactccagaccttacatat |
6038300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 30753797 - 30753762
Alignment:
| Q |
200 |
gtggtgaccggagtttgaactccagaccttacatat |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30753797 |
gtggtggccggagtttgaactccagaccttacatat |
30753762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University