View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_124 (Length: 281)

Name: NF1172_low_124
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_124
NF1172_low_124
[»] chr5 (15 HSPs)
chr5 (1-223)||(1580634-1580856)
chr5 (1-223)||(1603959-1604181)
chr5 (209-276)||(1586778-1586845)
chr5 (15-182)||(1590881-1591048)
chr5 (15-166)||(1587191-1587342)
chr5 (209-276)||(1586892-1586959)
chr5 (209-276)||(1591045-1591112)
chr5 (209-249)||(1586775-1586815)
chr5 (228-276)||(1586808-1586856)
chr5 (228-276)||(1586922-1586970)
chr5 (209-249)||(1586889-1586929)
chr5 (228-262)||(1591034-1591068)
chr5 (209-255)||(1591075-1591121)
chr5 (209-249)||(1587030-1587070)
chr5 (228-266)||(1587043-1587081)
[»] chr3 (3 HSPs)
chr3 (15-167)||(19270464-19270616)
chr3 (234-276)||(19270865-19270907)
chr3 (209-255)||(19270870-19270916)
[»] chr7 (1 HSPs)
chr7 (75-194)||(39616233-39616349)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1580856 - 1580634
Alignment:
Q  1 ttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  1580856 ttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactc 1580757  T
Q  101 ttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcctttcattgtgctttgtggaatattaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1580756 ttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactgcttctcctttcattgtgctttgtggaatattaag 1580657  T
Q  201 aggcaattttgtttcttggcgaa 223  Q
    |||||||||||||||||||||||    
T  1580656 aggcaattttgtttcttggcgaa 1580634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1603959 - 1604181
Alignment:
Q  1 ttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  1603959 ttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactc 1604058  T
Q  101 ttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcctttcattgtgctttgtggaatattaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1604059 ttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactgcttctcctttcattgtgctttgtggaatattaag 1604158  T
Q  201 aggcaattttgtttcttggcgaa 223  Q
    |||||||||||||||||||||||    
T  1604159 aggcaattttgtttcttggcgaa 1604181  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 1586845 - 1586778
Alignment:
Q  209 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaacatgatctccttcctttgcttct 276  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  1586845 ttgtttcttggcgaacatgatctccttccgttgtttcttggcgaacatgatctccttccattgtttct 1586778  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 1590881 - 1591048
Alignment:
Q  15 aataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgcctta 114  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||       |||   |||||||||||| |||||||||| || ||||||| ||| | |    
T  1590881 aataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggtttaacacttctttccgcataa 1590980  T
Q  115 t-cagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcctttcattgt 182  Q
      ||  | |||||||||||||||||||||||||||||||||| |||||||| || ||||||| ||||||    
T  1590981 aacatgc-tgctaccttcatcacttgagcgacaccttttctttttattcacgacatctccttccattgt 1591048  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 1587342 - 1587191
Alignment:
Q  15 aataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgcctta 114  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||       |||   |||||||||||| |||||||||| |||||||||| | |   |    
T  1587342 aataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggtttaactcttctttccac---a 1587246  T
Q  115 tcagccatgct---accttcatcacttgagcgacaccttttcttcttattcacta 166  Q
    | || ||||||   |||||||||||||||||||||||||||||| ||||||||||    
T  1587245 taagacatgctgctaccttcatcacttgagcgacaccttttctttttattcacta 1587191  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 1586959 - 1586892
Alignment:
Q  209 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaacatgatctccttcctttgcttct 276  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||    
T  1586959 ttgtttcttggcgaacatgatctccttccgttgtttcttggtgaacatgatctccttccattgtttct 1586892  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 1591045 - 1591112
Alignment:
Q  209 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaacatgatctccttcctttgcttct 276  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||| ||| ||||    
T  1591045 ttgtttcttggcgaacatgatctcgtgccattgtttcttggcaaacatgatctcgttccattgtttct 1591112  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 1586815 - 1586775
Alignment:
Q  209 ttgtttcttggcgaacatgatctccttccattgtttcttgg 249  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1586815 ttgtttcttggcgaacatgatctccttccattgtttcttgg 1586775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 1586856 - 1586808
Alignment:
Q  228 atctccttccattgtttcttggcgaacatgatctccttcctttgcttct 276  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  1586856 atctccttccattgtttcttggcgaacatgatctccttccgttgtttct 1586808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 1586970 - 1586922
Alignment:
Q  228 atctccttccattgtttcttggcgaacatgatctccttcctttgcttct 276  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  1586970 atctccttccattgtttcttggcgaacatgatctccttccgttgtttct 1586922  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 1586929 - 1586889
Alignment:
Q  209 ttgtttcttggcgaacatgatctccttccattgtttcttgg 249  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  1586929 ttgtttcttggtgaacatgatctccttccattgtttcttgg 1586889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 1591034 - 1591068
Alignment:
Q  228 atctccttccattgtttcttggcgaacatgatctc 262  Q
    |||||||||||||||||||||||||||||||||||    
T  1591034 atctccttccattgtttcttggcgaacatgatctc 1591068  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 1591075 - 1591121
Alignment:
Q  209 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaaca 255  Q
    |||||||||||| ||||||||||| |||||||||||||||| |||||    
T  1591075 ttgtttcttggcaaacatgatctcgttccattgtttcttggagaaca 1591121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 1587070 - 1587030
Alignment:
Q  209 ttgtttcttggcgaacatgatctccttccattgtttcttgg 249  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  1587070 ttgttttttggcgaacatgatctccttctattgtttcttgg 1587030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 1587081 - 1587043
Alignment:
Q  228 atctccttccattgtttcttggcgaacatgatctccttc 266  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  1587081 atctctttccattgttttttggcgaacatgatctccttc 1587043  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 19270464 - 19270616
Alignment:
Q  15 aataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgcctta 114  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||       |||  |||||||||||||||||||||||||||||||||||  || | |    
T  19270464 aataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggtttcactcttctttctgcgtga 19270563  T
Q  115 tcagccatgct---accttcatcacttgagcgacaccttttcttcttattcactac 167  Q
       | ||||||   ||||||||||||||||| |||||||||||| |||||||||||    
T  19270564 ---gacatgcttctaccttcatcacttgagcaacaccttttctttttattcactac 19270616  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 19270865 - 19270907
Alignment:
Q  234 ttccattgtttcttggcgaacatgatctccttcctttgcttct 276  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  19270865 ttccattgtttcttggcgaacatgatctcgttcctttgtttct 19270907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 19270870 - 19270916
Alignment:
Q  209 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaaca 255  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||    
T  19270870 ttgtttcttggcgaacatgatctcgttcctttgtttcttggagaaca 19270916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 39616233 - 39616349
Alignment:
Q  75 cttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcct 174  Q
    |||||||||| |||||||||||  |||||||| |||   || || ||||||| ||||||||| || |||||||||||||||  ||||| |||||||||||    
T  39616233 cttcttcgtggtctttggtttcgttcttctttccgc---ataagacatgctaacttcatcacatgggcgacaccttttcttggtattcgctacttctcct 39616329  T
Q  175 ttcattgtgctttgtggaat 194  Q
    | || |||| ||||||||||    
T  39616330 tccactgtgttttgtggaat 39616349  T

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