View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_129 (Length: 280)

Name: NF1172_low_129
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_129
NF1172_low_129
[»] chr7 (31 HSPs)
chr7 (30-280)||(39619637-39619886)
chr7 (168-280)||(41693749-41693861)
chr7 (64-126)||(41694953-41695016)
chr7 (62-126)||(12933415-12933480)
chr7 (60-116)||(43065995-43066051)
chr7 (61-126)||(24197101-24197167)
chr7 (168-280)||(32197752-32197864)
chr7 (168-204)||(39618758-39618794)
chr7 (168-224)||(42255061-42255117)
chr7 (64-126)||(17066423-17066486)
chr7 (65-126)||(24195606-24195668)
chr7 (183-276)||(28461749-28461842)
chr7 (64-125)||(30513280-30513341)
chr7 (50-119)||(31489941-31490010)
chr7 (65-125)||(41693644-41693705)
chr7 (168-224)||(36749147-36749203)
chr7 (168-224)||(37784083-37784139)
chr7 (182-249)||(31489811-31489878)
chr7 (64-126)||(31848142-31848205)
chr7 (67-118)||(31853549-31853600)
chr7 (64-119)||(32197915-32197970)
chr7 (64-118)||(5611514-5611568)
chr7 (69-126)||(11217069-11217127)
chr7 (65-126)||(35212067-35212129)
chr7 (67-116)||(30512046-30512095)
chr7 (65-118)||(36749254-36749307)
chr7 (69-118)||(38742184-38742233)
chr7 (65-118)||(42254957-42255010)
chr7 (168-241)||(43066106-43066179)
chr7 (66-118)||(36748198-36748249)
chr7 (168-224)||(36748300-36748356)
[»] chr3 (42 HSPs)
chr3 (168-280)||(52402967-52403079)
chr3 (67-118)||(45267306-45267357)
chr3 (56-119)||(22508725-22508788)
chr3 (183-234)||(37846450-37846501)
chr3 (64-118)||(20585651-20585705)
chr3 (168-234)||(32637077-32637143)
chr3 (61-126)||(39820602-39820668)
chr3 (64-118)||(54437474-54437528)
chr3 (168-221)||(42447690-42447743)
chr3 (64-126)||(45268568-45268631)
chr3 (64-126)||(47433807-47433870)
chr3 (64-118)||(38505586-38505640)
chr3 (168-234)||(40476324-40476390)
chr3 (64-118)||(46026074-46026128)
chr3 (65-201)||(52401016-52401153)
chr3 (64-118)||(52707534-52707588)
chr3 (66-127)||(52708614-52708676)
chr3 (65-126)||(53121301-53121363)
chr3 (66-118)||(46104343-46104395)
chr3 (66-118)||(48033058-48033110)
chr3 (64-126)||(976778-976841)
chr3 (68-126)||(20488368-20488427)
chr3 (61-116)||(37845400-37845455)
chr3 (65-116)||(44507808-44507859)
chr3 (168-274)||(977695-977801)
chr3 (168-234)||(4705786-4705852)
chr3 (168-230)||(32635697-32635759)
chr3 (59-97)||(35407759-35407797)
chr3 (65-119)||(35639506-35639560)
chr3 (67-117)||(40476222-40476272)
chr3 (65-126)||(46027415-46027477)
chr3 (168-234)||(51004245-51004311)
chr3 (67-112)||(15782216-15782261)
chr3 (69-126)||(15782708-15782765)
chr3 (182-247)||(20585401-20585466)
chr3 (65-118)||(40477381-40477434)
chr3 (64-117)||(42446524-42446577)
chr3 (64-124)||(52403124-52403185)
chr3 (66-118)||(4705681-4705733)
chr3 (66-118)||(9855178-9855230)
chr3 (67-126)||(20489356-20489416)
chr3 (168-212)||(53632720-53632764)
[»] chr6 (19 HSPs)
chr6 (168-280)||(17516265-17516377)
chr6 (66-118)||(1974159-1974211)
chr6 (63-126)||(34995111-34995175)
chr6 (64-126)||(17517307-17517370)
chr6 (64-126)||(34998139-34998202)
chr6 (69-126)||(3279497-3279555)
chr6 (66-126)||(18810532-18810593)
chr6 (68-118)||(17516164-17516214)
chr6 (66-126)||(20897495-20897556)
chr6 (57-118)||(21165237-21165298)
chr6 (65-126)||(16995450-16995512)
chr6 (69-118)||(1171658-1171707)
chr6 (69-118)||(20391217-20391266)
chr6 (68-113)||(20895960-20896005)
chr6 (183-276)||(25440521-25440614)
chr6 (65-118)||(29291358-29291411)
chr6 (68-117)||(30253547-30253596)
chr6 (66-118)||(17000284-17000336)
chr6 (168-232)||(21953309-21953373)
[»] chr8 (24 HSPs)
chr8 (169-280)||(14197927-14198032)
chr8 (65-247)||(22534599-22534782)
chr8 (68-118)||(3483635-3483685)
chr8 (68-118)||(38455449-38455499)
chr8 (67-126)||(28996835-28996895)
chr8 (66-118)||(28998000-28998052)
chr8 (64-126)||(10717119-10717182)
chr8 (63-118)||(10718455-10718510)
chr8 (65-126)||(36588221-36588283)
chr8 (168-226)||(38658583-38658641)
chr8 (64-126)||(30124221-30124284)
chr8 (64-126)||(38658479-38658542)
chr8 (67-118)||(39440429-39440480)
chr8 (63-118)||(45517967-45518022)
chr8 (65-119)||(6783577-6783631)
chr8 (168-202)||(28996937-28996971)
chr8 (66-107)||(1420460-1420501)
chr8 (168-221)||(10293728-10293781)
chr8 (67-127)||(41354472-41354533)
chr8 (58-126)||(45516389-45516458)
chr8 (66-118)||(4183986-4184038)
chr8 (168-224)||(18326614-18326670)
chr8 (65-113)||(30123151-30123199)
chr8 (56-116)||(41357375-41357435)
[»] chr1 (37 HSPs)
chr1 (168-280)||(24610022-24610134)
chr1 (168-280)||(24422618-24422730)
chr1 (65-224)||(24611017-24611177)
chr1 (66-126)||(46075048-46075109)
chr1 (168-280)||(35911732-35911844)
chr1 (65-126)||(27262907-27262969)
chr1 (168-273)||(24427220-24427325)
chr1 (59-126)||(9774886-9774954)
chr1 (168-276)||(13074424-13074532)
chr1 (63-126)||(27264214-27264278)
chr1 (168-260)||(30722219-30722311)
chr1 (168-280)||(34934591-34934703)
chr1 (168-280)||(35721201-35721313)
chr1 (65-126)||(20723686-20723748)
chr1 (168-234)||(23469859-23469925)
chr1 (65-115)||(45979506-45979556)
chr1 (65-119)||(50164402-50164456)
chr1 (69-118)||(9774040-9774089)
chr1 (66-126)||(24427367-24427428)
chr1 (65-118)||(26863859-26863912)
chr1 (66-119)||(37396846-37396899)
chr1 (65-118)||(48588968-48589021)
chr1 (66-118)||(24609919-24609971)
chr1 (63-126)||(35721098-35721162)
chr1 (168-232)||(35722177-35722241)
chr1 (168-260)||(37396704-37396796)
chr1 (63-126)||(23292576-23292639)
chr1 (60-99)||(46073879-46073918)
chr1 (65-126)||(11710552-11710614)
chr1 (65-126)||(47038865-47038927)
chr1 (168-210)||(48856313-48856355)
chr1 (65-118)||(37395632-37395685)
chr1 (63-116)||(48334141-48334194)
chr1 (66-126)||(11711252-11711312)
chr1 (168-224)||(20723588-20723644)
chr1 (66-106)||(23469988-23470028)
chr1 (64-127)||(34934744-34934808)
[»] chr5 (15 HSPs)
chr5 (68-126)||(6044132-6044190)
chr5 (65-126)||(3936577-3936639)
chr5 (168-276)||(6893858-6893966)
chr5 (168-239)||(15603944-15604015)
chr5 (61-126)||(27459489-27459554)
chr5 (64-117)||(34910591-34910643)
chr5 (64-126)||(3954050-3954113)
chr5 (58-124)||(31540488-31540555)
chr5 (64-118)||(4565391-4565445)
chr5 (68-126)||(27570058-27570116)
chr5 (65-126)||(27571127-27571189)
chr5 (66-106)||(25252641-25252681)
chr5 (66-106)||(25316426-25316466)
chr5 (66-98)||(31541649-31541681)
chr5 (61-97)||(40038489-40038525)
[»] chr2 (17 HSPs)
chr2 (65-126)||(1777468-1777530)
chr2 (64-118)||(25977868-25977922)
chr2 (168-276)||(3924713-3924821)
chr2 (66-125)||(11088679-11088739)
chr2 (64-126)||(2412426-2412489)
chr2 (65-126)||(25979249-25979311)
chr2 (168-241)||(23862933-23863006)
chr2 (63-126)||(23861749-23861813)
chr2 (168-276)||(25282509-25282617)
chr2 (64-126)||(4038840-4038903)
chr2 (63-113)||(12068357-12068407)
chr2 (61-126)||(36837776-36837842)
chr2 (66-119)||(11087049-11087102)
chr2 (63-127)||(19603735-19603799)
chr2 (174-210)||(24749514-24749550)
chr2 (66-114)||(25283283-25283331)
chr2 (64-116)||(29794326-29794377)
[»] scaffold0516 (2 HSPs)
scaffold0516 (168-237)||(1022-1091)
scaffold0516 (66-118)||(1142-1194)
[»] scaffold0106 (1 HSPs)
scaffold0106 (62-126)||(30905-30970)
[»] chr4 (22 HSPs)
chr4 (168-276)||(16573480-16573588)
chr4 (64-118)||(19674412-19674466)
chr4 (65-119)||(29060888-29060942)
chr4 (65-126)||(33137226-33137288)
chr4 (56-119)||(41933808-41933871)
chr4 (64-118)||(3879084-3879138)
chr4 (65-126)||(42358031-42358093)
chr4 (65-118)||(3880503-3880556)
chr4 (66-126)||(22204055-22204116)
chr4 (66-126)||(42359344-42359405)
chr4 (66-118)||(32699321-32699373)
chr4 (64-116)||(38166493-38166545)
chr4 (64-126)||(45618283-45618346)
chr4 (168-210)||(41934983-41935025)
chr4 (69-127)||(41935068-41935126)
chr4 (66-116)||(44705299-44705349)
chr4 (68-117)||(16916069-16916118)
chr4 (64-97)||(33134889-33134922)
chr4 (183-276)||(44706210-44706303)
chr4 (168-204)||(29415654-29415690)
chr4 (63-126)||(30091053-30091117)
chr4 (63-126)||(54121698-54121762)
[»] scaffold0230 (1 HSPs)
scaffold0230 (66-126)||(429-490)
[»] scaffold0002 (4 HSPs)
scaffold0002 (66-118)||(374335-374387)
scaffold0002 (168-234)||(345041-345107)
scaffold0002 (64-118)||(345904-345958)
scaffold0002 (64-113)||(376381-376430)
[»] scaffold0562 (1 HSPs)
scaffold0562 (64-118)||(9920-9974)
[»] scaffold0517 (3 HSPs)
scaffold0517 (66-119)||(10315-10368)
scaffold0517 (168-260)||(10418-10510)
scaffold0517 (65-118)||(11529-11582)
[»] scaffold0001 (2 HSPs)
scaffold0001 (66-118)||(119593-119645)
scaffold0001 (66-126)||(120983-121044)
[»] scaffold0095 (1 HSPs)
scaffold0095 (67-118)||(42762-42813)
[»] scaffold0765 (1 HSPs)
scaffold0765 (69-114)||(1863-1908)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 39619886 - 39619637
Alignment:
Q  30 taattttcaatcgcgataagtgtaccattataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaatgn 129  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||| |||||||| |||||||||       
T  39619886 taatttccaatcgcgataagtgtaccattataaataggctaaaatatgcttttggtccatgcaaatatggcgagtttgggttttggttctggtaaaaatt 39619787  T
Q  130 nnnnnngaatttcatccctgcaaannnnnnnnnnnnnnaaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagc 229  Q
           ||||| ||||||||||               |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  39619786 ttttgt-aattttatccctgcaattttttttgttttttaaaatagtccttggactcactttcttaatgatttgtcacatttgtgcatatgtggcattagc 39619688  T
Q  230 tgactatgcaaacttgtacacgtgtcatccatgtggtaattattttatttt 280  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39619687 tgactatgcaaacttgtacatgtgtcatccatgtggtaattattttatttt 39619637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 41693749 - 41693861
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||| ||  || ||||| ||||||||||||||||||||||||||||||||||||||||||  | |||||||||||| ||| |||||| |||| |    
T  41693749 aaaatagtccctgaccctacttttttgatgatttgtcacatttgtgcatatgtggcattagctgacggtacaaacttgtacatgtgacatccacgtggca 41693848  T
Q  268 attattttatttt 280  Q
    |||||||||||||    
T  41693849 attattttatttt 41693861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 41695016 - 41694953
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||    
T  41695016 taggctaaaatatgtttttcatccctgcaaatatagcgagtttgagttttggtccctggtaaaa 41694953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 12933415 - 12933480
Alignment:
Q  62 aataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||| ||||||||||    
T  12933415 aataggctaaaatatgcttttggtccctgcaaatatagtgagtttgaattttggtccctggtaaaa 12933480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 43065995 - 43066051
Alignment:
Q  60 taaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 116  Q
    |||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  43065995 taaataggttaaaatatgttttttatccctgcaaatatagcgagtttgagttttggt 43066051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 24197167 - 24197101
Alignment:
Q  61 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaaa 126  Q
    ||||||||||||||||| ||||| ||| ||||||||||| || |||||||||||| |||||||||||    
T  24197167 aaataggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggttcctggtaaaa 24197101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 32197864 - 32197752
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||| ||| |||| ||| | ||||||||||||||||| ||||||  |||||   ||||||  ||||||| |||||| ||| |||||| |||  |    
T  32197864 aaaatagtccctggtcccattttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggtgaca 32197765  T
Q  268 attattttatttt 280  Q
    |||||||||||||    
T  32197764 attattttatttt 32197752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 39618758 - 39618794
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtc 204  Q
    |||||||||||||||||||||||||||||||||||||    
T  39618758 aaaatagtccttggacccactttcttgatgatttgtc 39618794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 42255061 - 42255117
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 224  Q
    ||||||||| ||||| ||||||||||| ||||||||| ||||| |||||||||||||    
T  42255061 aaaatagtcattggatccactttcttgctgatttgtcccatttctgcatatgtggca 42255117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 17066423 - 17066486
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||| |||| |||| ||||||||||| ||||||| |||||||| ||||||||||    
T  17066423 taggctaaaatatgcttttaatccctgcaaatatagcgagtttgggttttggtccctggtaaaa 17066486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 24195606 - 24195668
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| |||||| | ||||||||||    
T  24195606 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttgctccctggtaaaa 24195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 28461749 - 28461842
Alignment:
Q  183 cccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggtaattatttta 276  Q
    |||||||| ||||||||||| ||||||| ||| |||||| |||| ||||||| || ||  |||||||  || || ||| |||||||||||||||    
T  28461749 cccactttattgatgatttggcacatttatgcctatgtgacattcgctgactgtgtaagtttgtacatttggcagccacgtggtaattatttta 28461842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 30513341 - 30513280
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaa 125  Q
    |||||||||||||| ||||| ||| |||||||||  ||||||||  ||||||||||||||||    
T  30513341 taggctaaaatatgattttggtccttgcaaatatgatgagtttggattttggtcctggtaaa 30513280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 31490010 - 31489941
Alignment:
Q  50 tgtaccattataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    |||| |||| ||| || ||||||||||||||||| ||| ||||||||||  ||||||| |||||||||||    
T  31490010 tgtagcattctaattaagctaaaatatgtttttggtccctgcaaatataacgagtttgggttttggtcct 31489941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 41693644 - 41693705
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaa 125  Q
    ||||||||||||||||||||||| ||||||||| | || |||| |||||||| |||||||||    
T  41693644 aggctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttggtccctggtaaa 41693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 36749203 - 36749147
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 224  Q
    ||||||||| ||||| ||||||||| | ||||||||| ||||| |||||||||||||    
T  36749203 aaaatagtctttggatccactttctcgctgatttgtctcatttctgcatatgtggca 36749147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 37784083 - 37784139
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 224  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||  ||| |||||||||    
T  37784083 aaaatagtccttggaccaactttcttgctgatttgtctcattcctgcctatgtggca 37784139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 31489878 - 31489811
Alignment:
Q  182 acccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtaca 249  Q
    ||||||||||||| ||||||||| ||||| ||| ||||||||||  ||| ||| ||||||| ||||||    
T  31489878 acccactttcttgctgatttgtctcatttttgcctatgtggcatatgctaactctgcaaacctgtaca 31489811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 31848205 - 31848142
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||||||  ||| ||||||||||| || |||| |||||||| ||||||||||    
T  31848205 taggctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctggtaaaa 31848142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 31853549 - 31853600
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||||| ||| ||||||||| |||||||||  |||||||||    
T  31853549 gctaaaatatgtttttggtccctgcaaatattgtgagtttggattttggtcc 31853600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 32197970 - 32197915
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    |||||||||||||| ||||| ||| ||||||||||| || |||| |||||||||||    
T  32197970 taggctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggtcct 32197915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 5611568 - 5611514
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||| ||||| ||||    
T  5611568 taggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttcgtcc 5611514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 11217127 - 11217069
Alignment:
Q  69 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||| ||||| ||| ||||||||||| |||||||| ||||||| ||||||||||    
T  11217127 taaaatatgcttttggtccctgcaaatatagcgagtttgaattttggtccctggtaaaa 11217069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 35212067 - 35212129
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| |||||||||   ||||||| |||||||| ||||||||||    
T  35212067 aggctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaaaa 35212129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 30512046 - 30512095
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 116  Q
    |||||||||| |||||| ||| ||||||||||| || |||||||||||||    
T  30512046 gctaaaatatatttttgttccttgcaaatatagcgaatttgagttttggt 30512095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 36749307 - 36749254
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||||||| ||  |||||||||   ||||||||||||||||||    
T  36749307 aggctaaaatatgtttttggtcattgcaaatatgacgagtttgagttttggtcc 36749254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 38742184 - 38742233
Alignment:
Q  69 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||  ||| ||||||||||| ||||||| ||||||||||    
T  38742184 taaaatatgtttttagtccctgcaaatatagcgagtttgggttttggtcc 38742233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 42254957 - 42255010
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||| ||||| ||| || |||||| | ||||||||||||||||||    
T  42254957 aggctaaaatatgcttttggtccctgtaaatatggcgagtttgagttttggtcc 42255010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 43066106 - 43066179
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaa 241  Q
    |||||||||||||| || ||||  ||||||||||||  ||||| ||| |||||||||||  |||||| ||||||    
T  43066106 aaaatagtccttggccctacttaattgatgatttgttgcatttttgcctatgtggcattctctgactgtgcaaa 43066179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 36748198 - 36748249
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||| ||| ||||||||| | ||||||| ||||||||||    
T  36748198 ggctaaaatatgtttttggtccctgcaaatat-gagagtttgggttttggtcc 36748249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 36748300 - 36748356
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 224  Q
    |||||||||  |||||||||||| ||| ||||||||| ||||| ||| |||||||||    
T  36748300 aaaatagtctctggacccacttttttgctgatttgtctcatttttgcctatgtggca 36748356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 52403079 - 52402967
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52403079 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtggta 52402980  T
Q  268 attattttatttt 280  Q
    |||||||||||||    
T  52402979 attattttatttt 52402967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 45267306 - 45267357
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  45267306 gctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtcc 45267357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 22508725 - 22508788
Alignment:
Q  56 attataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    |||| ||||||| ||||||||| ||||| ||| ||||||||||| |||||||||||||||||||    
T  22508725 attaaaaataggttaaaatatgattttggtccctgcaaatatagcgagtttgagttttggtcct 22508788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 37846501 - 37846450
Alignment:
Q  183 cccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 234  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  37846501 cccattttcttgatgatttgtcacttttttgcatatgtggcattagctgact 37846450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 20585705 - 20585651
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||||||||| ||||||||||| |||||||  |||||||||    
T  20585705 taggctaaaatatgtttttgatccctgcaaatatagcgagtttggattttggtcc 20585651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 32637143 - 32637077
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 234  Q
    |||||||||| ||  |||||||| ||||||||||| | ||||| |||||||||||||||||||||||    
T  32637143 aaaatagtccctgaccccactttattgatgatttggcgcatttttgcatatgtggcattagctgact 32637077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 39820668 - 39820602
Alignment:
Q  61 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  39820668 aaataggctaaaatatggttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 39820602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 54437528 - 54437474
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||||| ||| ||||||||||| || |||||||||||||||    
T  54437528 taggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttggtcc 54437474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 42447743 - 42447690
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtg 221  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||    
T  42447743 aaaatagtccttggacccactttcttgctgatttgtcccatttttgcctatgtg 42447690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 45268631 - 45268568
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| |||| |||||||||||  |||||| |||||||| ||||||||||    
T  45268631 taggctaaaatatgtttttaatccctgcaaatatagcaagtttgggttttggtccctggtaaaa 45268568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 47433870 - 47433807
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||| ||||| ||| ||||||||||| || ||||||||||||| ||||||||||    
T  47433870 taggctaaaatatggttttggtccctgcaaatatagcgaatttgagttttggtccctggtaaaa 47433807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 38505640 - 38505586
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||| ||||| ||| ||||||||| | ||||||||||||||||||    
T  38505640 taggctaaaatatgcttttgctccctgcaaatatggcgagtttgagttttggtcc 38505586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 40476324 - 40476390
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 234  Q
    |||||| ||||||  |||||||| ||||| ||||| ||||||| |||||| ||||||||||||||||    
T  40476324 aaaataatccttgaccccactttattgataatttggcacatttttgcatacgtggcattagctgact 40476390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 46026074 - 46026128
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||  |||||||||    
T  46026074 taggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtcc 46026128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 52401016 - 52401153
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaatgnnnnnnngaatttcatccctgcaaannnnnnnnnn 163  Q
    ||||||||||||||||||| ||| ||||||||| | ||||||| |||||||| ||||||||| |        ||||||||||||||||||              
T  52401016 aggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctggtaaattttttttttgaatttcatccctgcaaatttttttgtt 52401115  T
Q  164 nnnnaaaatagtccttggacccactttcttgatgattt 201  Q
        |||||||||| |||||||||||||||||||||||    
T  52401116 ttttaaaatagtccatggacccactttcttgatgattt 52401153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 52707534 - 52707588
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||| ||||||||||||||| ||| ||||||||||| || |||||||||||||||    
T  52707534 taggttaaaatatgtttttggtccttgcaaatatagcgaatttgagttttggtcc 52707588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 52708676 - 52708614
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc-ctggtaaaat 127  Q
    |||||||||||| ||||| ||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  52708676 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtctctggtaaaat 52708614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 53121301 - 53121363
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| ||||| || ||||||||||    
T  53121301 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaa 53121363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 46104343 - 46104395
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||| ||||| ||| ||||||||||| ||||||||||||| ||||    
T  46104343 ggctaaaatatgattttggtccctgcaaatatagcgagtttgagtttttgtcc 46104395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 48033058 - 48033110
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||| ||| ||||||||| |||||||||  |||||||||    
T  48033058 ggctaaaatatgtttttggtccttgcaaatatggtgagtttggattttggtcc 48033110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 976778 - 976841
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||| ||||||||| ||||||||||| || ||| |||||| || ||||||||||    
T  976778 taggctaaaatatgcttttgatccctgcaaatatagcgaatttaagttttagtccctggtaaaa 976841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 20488368 - 20488427
Alignment:
Q  68 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||| ||| ||||||||| |||| |||| |||||||| ||||||||||    
T  20488368 ctaaaatatgtttttggtccctgcaaatatggtgaatttgggttttggtccctggtaaaa 20488427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 37845400 - 37845455
Alignment:
Q  61 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 116  Q
    ||||||| ||||||||||||||| ||  |||||||||||||||||||  |||||||    
T  37845400 aaataggttaaaatatgtttttggtctctgcaaatatagtgagtttgtattttggt 37845455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 44507859 - 44507808
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 116  Q
    ||||||||||||| ||||| ||| ||||||||||| |||||||| |||||||    
T  44507859 aggctaaaatatgattttggtccctgcaaatatagcgagtttgaattttggt 44507808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 977801 - 977695
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||| ||| ||  || |||| |||||| ||| ||  |||||||  || || ||| ||||||    
T  977801 aaaatagtcattggccccactttattgatgatttggcacatttatgcctacatgtcattcgctgacaatgtaagtttgtacatttggcagccacgtggta 977702  T
Q  268 attattt 274  Q
    |||||||    
T  977701 attattt 977695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 4705786 - 4705852
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 234  Q
    |||||||||||||| || |||||  |||||||||| ||||||| ||| || |||||||| |||||||    
T  4705786 aaaatagtccttggcccaactttactgatgatttggcacatttatgcctacgtggcattcgctgact 4705852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 32635697 - 32635759
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagct 230  Q
    |||||||||| | | |||||||| ||||||||||| | ||||| | |||||||||||||||||    
T  32635697 aaaatagtccatagccccactttattgatgatttggcgcatttttacatatgtggcattagct 32635759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 35407797 - 35407759
Alignment:
Q  59 ataaataggctaaaatatgtttttgatccatgcaaatat 97  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  35407797 ataaataggctaaaatatggttttgatccctgcaaatat 35407759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 35639506 - 35639560
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    ||||||||||||| ||||| ||| || ||||||||  ||||||||||||||||||    
T  35639506 aggctaaaatatgcttttggtccttgaaaatatagcaagtttgagttttggtcct 35639560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 40476222 - 40476272
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 117  Q
    ||||||||||||||||| ||| ||||||||||| |||||||  ||||||||    
T  40476222 gctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtc 40476272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 46027477 - 46027415
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||  ||||| ||| ||||||||||| |||||||| ||||||| ||||||||||    
T  46027477 aggctaaaatatacttttggtccctgcaaatatagcgagtttgaattttggtccctggtaaaa 46027415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 51004245 - 51004311
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 234  Q
    ||||||||||||   |||||||| ||||||||||| ||||||| ||| || |||||||| |||||||    
T  51004245 aaaatagtccttaaccccactttattgatgatttggcacatttatgcctacgtggcattcgctgact 51004311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 15782216 - 15782261
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttt 112  Q
    |||||||||| |||||| ||| ||||||||||| ||||||||||||    
T  15782216 gctaaaatatatttttggtccctgcaaatatagcgagtttgagttt 15782261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 15782765 - 15782708
Alignment:
Q  69 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 126  Q
    ||||||||||||||| ||| | ||||||||| || ||||||||||  |||||||||||    
T  15782765 taaaatatgtttttggtccctacaaatatagcgaatttgagttttattcctggtaaaa 15782708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 20585466 - 20585401
Alignment:
Q  182 acccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgta 247  Q
    ||||||||||||| ||||||| | ||||| ||| ||||||||||  ||||||| | ||||||||||    
T  20585466 acccactttcttgctgatttgactcatttttgcttatgtggcatgtgctgactgtacaaacttgta 20585401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 40477434 - 40477381
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||| ||||| ||| ||||||||||  ||||||| ||||||||||    
T  40477434 aggctaaaatatgattttggtccctgcaaatataacgagtttgggttttggtcc 40477381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 42446524 - 42446577
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 117  Q
    |||||||||||||| ||||| ||| ||||||||| | ||||||| |||||||||    
T  42446524 taggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtc 42446577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 52403185 - 52403124
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaa 124  Q
    |||||||||||||| ||||| ||| ||||||||| | ||||||| |||||||| ||||||||    
T  52403185 taggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtccctggtaa 52403124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 4705681 - 4705733
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||| ||||||||| ||||||||| | ||||||  ||||||||||    
T  4705681 ggctaaaatatgcttttgatccctgcaaatatggcgagtttaggttttggtcc 4705733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 9855178 - 9855230
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||| ||||||||| || |||||||| |||||||  |||||||||    
T  9855178 ggctaaaatatgattttgatccctgtaaatatagcgagtttggattttggtcc 9855230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 20489416 - 20489356
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||| ||| |||||||||   ||||||| |||||||| ||||||||||    
T  20489416 gctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaaaa 20489356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 53632764 - 53632720
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgt 212  Q
    |||||||||| | |||||||||||||| ||||||||| |||||||    
T  53632764 aaaatagtccctagacccactttcttgctgatttgtcccatttgt 53632720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 17516265 - 17516377
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  17516265 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattaactgactatgcaaacttgtacatgtgtcatccatgtggta 17516364  T
Q  268 attattttatttt 280  Q
    |||||||||||||    
T  17516365 attattttatttt 17516377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 1974211 - 1974159
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||||||| ||||||||||| || |||||||||||||||    
T  1974211 ggctaaaatatgtttttgatccttgcaaatatagcgaatttgagttttggtcc 1974159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 34995111 - 34995175
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaaa 126  Q
    ||||||||||||||| ||||||||| ||||||||||| || |||||||||||| |||||||||||    
T  34995111 ataggctaaaatatgcttttgatccctgcaaatatagcgaatttgagttttggttcctggtaaaa 34995175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 17517370 - 17517307
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||||||| ||| ||||||||| | |||||||||||||||| ||||||||||    
T  17517370 taggctaaaatatgtttttggtccctgcaaatatggcgagtttgagttttggtccctggtaaaa 17517307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 34998202 - 34998139
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| ||||||||||    
T  34998202 taggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaa 34998139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 3279555 - 3279497
Alignment:
Q  69 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaaa 126  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||    
T  3279555 taaaatatgtttttgatccctgcaaatatagcgagtttgaattttggttcctggtaaaa 3279497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 18810532 - 18810593
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  18810532 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 18810593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 17516164 - 17516214
Alignment:
Q  68 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  17516164 ctaaaatatgtttttggtccctgcaaatatggtgagtttgggttttggtcc 17516214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 20897556 - 20897495
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||| ||||| ||| |||||||||||||| |||| |||||||| ||||||||||    
T  20897556 ggctaaaatatggttttggtccctgcaaatatagtgaatttgggttttggtccctggtaaaa 20897495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 21165237 - 21165298
Alignment:
Q  57 ttataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||| || |||||||||||| ||||| ||| ||||||||||| ||||||| ||||||||||    
T  21165237 ttatatattggctaaaatatgcttttggtccctgcaaatatagcgagtttgtgttttggtcc 21165298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 16995450 - 16995512
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| ||||||||||  || |||| |||||||| ||||||||||    
T  16995450 aggctaaaatatgtttttggtccctgcaaatataaagaatttgggttttggtccctggtaaaa 16995512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 1171707 - 1171658
Alignment:
Q  69 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||||||| ||||||||||  |||||||  |||||||||    
T  1171707 taaaatatgtttttgatccctgcaaatataacgagtttggtttttggtcc 1171658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 20391217 - 20391266
Alignment:
Q  69 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||| ||||| ||| |||||||||||||| |||| ||||||||||    
T  20391217 taaaatatgcttttggtccctgcaaatatagtgaatttgggttttggtcc 20391266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 20895960 - 20896005
Alignment:
Q  68 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagtttt 113  Q
    |||||||||||||||| ||| ||||||||||| || ||||||||||    
T  20895960 ctaaaatatgtttttggtccctgcaaatatagcgaatttgagtttt 20896005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 25440614 - 25440521
Alignment:
Q  183 cccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggtaattatttta 276  Q
    |||||||| ||||||||||| ||||||| ||| || |||||||| ||||||| || ||  |||||||  || || ||| | |||||||||||||    
T  25440614 cccactttattgatgatttgacacatttatgcctacgtggcattcgctgactgtgtaagtttgtacatttgacagccacgcggtaattatttta 25440521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 29291358 - 29291411
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||| ||||| ||| ||||||||| | ||||||| ||||||||||    
T  29291358 aggctaaaatatgcttttggtccttgcaaatatggcgagtttgggttttggtcc 29291411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 30253596 - 30253547
Alignment:
Q  68 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 117  Q
    |||||||||||||||| ||| |||||||| || |||| ||||||||||||    
T  30253596 ctaaaatatgtttttggtccctgcaaatacagcgagtatgagttttggtc 30253547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 17000336 - 17000284
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||  ||||| ||| ||||||| ||||||||||| ||||||||||    
T  17000336 ggctaaaatatacttttggtccctgcaaatgtagtgagtttgggttttggtcc 17000284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 21953309 - 21953373
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctga 232  Q
    |||||||||| | | |||||||| | ||||||||||||||||| ||||||| || ||||| ||||    
T  21953309 aaaatagtccctagtcccactttttcgatgatttgtcacatttatgcatatttgacattaactga 21953373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 14197927 - 14198032
Alignment:
Q  169 aaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggtaa 268  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||      |||||||||||| | ||| ||||||||||||||    
T  14197927 aaatagtccatggatccactttcttgatgatttgtcacatttgtgaatatgtggcattagc------tgcaaacttgtatatgtgccatccatgtggtaa 14198020  T
Q  269 ttattttatttt 280  Q
    ||||||||||||    
T  14198021 ttattttatttt 14198032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 247
Target Start/End: Complemental strand, 22534782 - 22534599
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaatgnnnnnnngaatttcatccctgcaaannnnnnnnnn 163  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||        |||||||| |||||||||              
T  22534782 aggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaatttttttttgaatttcaaccctgcaaaattttttgtt 22534683  T
Q  164 nnnnaaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgta 247  Q
        |||| |||||||||||||||||||||| ||||||| | ||||| ||| |||||||||   ||||||| | ||||||||||    
T  22534682 ttttaaaaaagtccttggacccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactgtacaaacttgta 22534599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 3483635 - 3483685
Alignment:
Q  68 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  3483635 ctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtcc 3483685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 38455449 - 38455499
Alignment:
Q  68 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||    
T  38455449 ctaaaatatgtttttggtccttgcaaatatagtgaatttgagttttggtcc 38455499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 28996835 - 28996895
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  28996835 gctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 28996895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 28998052 - 28998000
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||    
T  28998052 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtcc 28998000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 10717119 - 10717182
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  10717119 taggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 10717182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 10718510 - 10718455
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||| ||||| ||| ||||||||||| ||||||| ||||||||||    
T  10718510 ataggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtcc 10718455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 36588221 - 36588283
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  36588221 aggctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtccctggtaaaa 36588283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 38658583 - 38658641
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcatt 226  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||| ||| |||||||||||    
T  38658583 aaaatagtctttggccccactttattgatgatttggcacatttatgcctatgtggcatt 38658641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 30124284 - 30124221
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||| ||||| ||| |||||||| ||  ||||||||||||||| ||||||||||    
T  30124284 taggctaaaatatgcttttggtccctgcaaataaagcaagtttgagttttggtccctggtaaaa 30124221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 38658479 - 38658542
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||| || || ||||||||||||||| || |||| |||||||| ||||||||||    
T  38658479 taggctaaaatatgcttctggtccatgcaaatatagcgaatttgggttttggtccctggtaaaa 38658542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 39440480 - 39440429
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||| ||||| ||| ||||||||| | ||||||||||||||||||    
T  39440480 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtcc 39440429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 45518022 - 45517967
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||| ||||| ||| ||||| ||||| ||||||| ||||||||||    
T  45518022 ataggctaaaatatgcttttggtccctgcaagtatagcgagtttgggttttggtcc 45517967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 6783577 - 6783631
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    ||||||||||||||||||| ||  ||||||||| |||| ||||| ||||||||||    
T  6783577 aggctaaaatatgtttttggtcactgcaaatatggtgaatttgaattttggtcct 6783631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 28996937 - 28996971
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttg 202  Q
    ||||||||||||||||||||||| |||||||||||    
T  28996937 aaaatagtccttggacccactttattgatgatttg 28996971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 1420501 - 1420460
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttg 107  Q
    |||||||||||||||||| ||| ||||||||||| |||||||    
T  1420501 ggctaaaatatgtttttggtccctgcaaatatagcgagtttg 1420460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 10293781 - 10293728
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtg 221  Q
    ||||||||||||  ||||| ||||||| ||||||||| ||||| ||||||||||    
T  10293781 aaaatagtccttaaacccattttcttgctgatttgtctcatttatgcatatgtg 10293728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 41354472 - 41354533
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaaat 127  Q
    ||||||||||||||||| ||| |  |||||||| |||||||| |||||| ||||||||||||    
T  41354472 gctaaaatatgtttttggtccttataaatatagcgagtttgaattttggttcctggtaaaat 41354533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 45516389 - 45516458
Alignment:
Q  58 tataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc-ctggtaaaa 126  Q
    |||||| || |||||||||||||||  |||||| |||||||| || |||| ||||||||| |||||||||    
T  45516389 tataaaaagactaaaatatgtttttagtccatgtaaatatagcgaatttgggttttggtctctggtaaaa 45516458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 4184038 - 4183986
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||| ||||  ||| ||||||||||||| ||||| ||||||||||    
T  4184038 ggctaaaatatgcttttagtccctgcaaatatagtgcgtttgggttttggtcc 4183986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 18326614 - 18326670
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 224  Q
    |||||||||| ||  |||||||||||| ||||||||| ||||| ||| |||||||||    
T  18326614 aaaatagtccctgagcccactttcttgttgatttgtcccatttctgcctatgtggca 18326670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 30123151 - 30123199
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagtttt 113  Q
    ||||||||||||||||||| ||||| ||||||||| || |||| |||||    
T  30123151 aggctaaaatatgtttttggtccatacaaatatagcgaatttgggtttt 30123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 41357435 - 41357375
Alignment:
Q  56 attataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 116  Q
    ||||| || ||| ||||||||||||||| |||  |||||||| ||||||||| ||||||||    
T  41357435 attatcaaaaggttaaaatatgtttttggtcctcgcaaatatggtgagtttgggttttggt 41357375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 24610022 - 24610134
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||| | | |||||||| ||| |||||||||||||||||||||||||||||| |||||| | | |||||||||||| ||| ||||||||||| |    
T  24610022 aaaatagtccctcgccccacttttttggtgatttgtcacatttgtgcatatgtggcatgagctgattgtacaaacttgtacatgtggcatccatgtggca 24610121  T
Q  268 attattttatttt 280  Q
    ||||| |||||||    
T  24610122 attatattatttt 24610134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 24422618 - 24422730
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||||| |||||||||||||| | ||||||| ||||| ||| ||||||||||  ||||||||||||||| |||||| ||| |||||| |||| |    
T  24422618 aaaatagtccttagacccactttcttgctaatttgtctcatttctgcctatgtggcatatgctgactatgcaaacatgtacatgtggcatccaggtggca 24422717  T
Q  268 attattttatttt 280  Q
    || |||| |||||    
T  24422718 ataatttaatttt 24422730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 24611177 - 24611017
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc-tggtaaaatgnnnnnnngaatttcatccctgcaaannnnnnnnnn 163  Q
    ||||||||||||||||||| ||| || ||||||   |||||||||||||||||| |||||||||        ||||||||||||||||||              
T  24611177 aggctaaaatatgtttttggtccctgtaaatatgacgagtttgagttttggtccctggtaaaataaaattttgaatttcatccctgcaaaaatttttgtt 24611078  T
Q  164 nnnnaaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 224  Q
        ||||||||||||||||||||||||||||||||||||| ||||| ||  |||||||||    
T  24611077 tttcaaaatagtccttggacccactttcttgatgatttgtctcatttttgtctatgtggca 24611017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 46075109 - 46075048
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||    
T  46075109 ggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaa 46075048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 35911844 - 35911732
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    ||||| |||| ||| |||||||| | ||||||||||||||||| ||||||  |||||   ||||||  ||||||| |||||| ||| |||||| |||| |    
T  35911844 aaaatggtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggtggca 35911745  T
Q  268 attattttatttt 280  Q
    |||||||||||||    
T  35911744 attattttatttt 35911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 27262907 - 27262969
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  27262907 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgtgttttggtccctggtaaaa 27262969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 24427325 - 24427220
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||| || ||||||||||||| ||||||||| ||||| ||| ||| ||  ||  ||||||||||||||| |||||| ||| ||||||  ||| |    
T  24427325 aaaatagtccctgaacccactttcttggtgatttgtctcatttttgcctatttgaaatatgctgactatgcaaacctgtacatgtggcatccagttggca 24427226  T
Q  268 attatt 273  Q
    ||||||    
T  24427225 attatt 24427220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 9774954 - 9774886
Alignment:
Q  59 ataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||| ||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  9774954 ataaaaaggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 9774886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 13074532 - 13074424
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||| ||| || || ||||| ||||||| || ||  ||| |||  || || ||||||||||    
T  13074532 aaaatagtctttggccccactttattgatgatttggcacatttatgcctacgtagcattcgctgactgtgtaagtttgcacatttggcagccatgtggta 13074433  T
Q  268 attatttta 276  Q
    |||||||||    
T  13074432 attatttta 13074424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 27264278 - 27264214
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  27264278 ataggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 27264214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 30722219 - 30722311
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatcca 260  Q
    |||||||||| |||||||||||||||| ||||||||| ||||| ||| || ||||||   ||||||| || ||| |||  |||||||||||||    
T  30722219 aaaatagtccctggacccactttcttgctgatttgtctcatttttgcctacgtggcaaatgctgactgtgtaaagttggccacgtgtcatcca 30722311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 34934703 - 34934591
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||  | |||   ||||||  ||||||  |||||| ||| |||||| |||| |    
T  34934703 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcatactttgcagatgctgacggtgcaaatatgtacatgtggcatccaggtggca 34934604  T
Q  268 attattttatttt 280  Q
    |||||||||||||    
T  34934603 attattttatttt 34934591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 35721201 - 35721313
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||  |||||   ||||||  ||||||| | |||| ||| |||| | |||| |    
T  35721201 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatttacatgtggcatctaggtggca 35721300  T
Q  268 attattttatttt 280  Q
    |||||||||||||    
T  35721301 attattttatttt 35721313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 20723748 - 20723686
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| ||||||||||| || |||||||||| || ||||||||||    
T  20723748 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttagtccctggtaaaa 20723686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 23469925 - 23469859
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 234  Q
    |||||||||| | | |||||||  ||||||||||| | ||||| |||||||||||||||||||||||    
T  23469925 aaaatagtccctagccccacttcattgatgatttggcgcatttttgcatatgtggcattagctgact 23469859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 45979556 - 45979506
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg 115  Q
    ||||||||||||||||||| ||| ||||||||||| || ||||||||||||    
T  45979556 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttgg 45979506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 50164402 - 50164456
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    ||||||||||||| ||||| ||| ||||||||| | |||||||||||||||||||    
T  50164402 aggctaaaatatgcttttggtccctgcaaatatggcgagtttgagttttggtcct 50164456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 9774040 - 9774089
Alignment:
Q  69 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||| ||| ||||||||||  ||||||||||||||||||    
T  9774040 taaaatatgtttttggtccctgcaaatataacgagtttgagttttggtcc 9774089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 24427428 - 24427367
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||||| || ||||||||||    
T  24427428 ggctaaaatatgtttttggtccctacaaatatagcgagtttgagttttagtccctggtaaaa 24427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 26863859 - 26863912
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||| |||||||| ||| ||||||||||| || |||||||||||||||    
T  26863859 aggctaaaatgtgtttttggtccctgcaaatatagcgaatttgagttttggtcc 26863912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 37396899 - 37396846
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    |||||||||||| ||||| ||| ||||||||||| || ||||||||||||||||    
T  37396899 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtcct 37396846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 48589021 - 48588968
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||||||| ||| || |||||| ||||||||| ||||||||||    
T  48589021 aggctaaaatatgtttttggtccctgtaaatatggtgagtttgggttttggtcc 48588968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 24609919 - 24609971
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||| ||| ||||||||| | ||||||| ||||||||||    
T  24609919 ggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtcc 24609971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 35721098 - 35721162
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||||| ||| ||||||||||  || |||| |||||||| ||||||||||    
T  35721098 ataggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtccctggtaaaa 35721162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 35722241 - 35722177
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctga 232  Q
    |||||||||| | | |||||||| | ||||||||||||||||| ||||||| |||||||| ||||    
T  35722241 aaaatagtccctagtcccactttttcgatgatttgtcacatttatgcatatctggcattaactga 35722177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 37396796 - 37396704
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatcca 260  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||  |||||   ||||||  ||||||| |||||| ||| ||||||    
T  37396796 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatcca 37396704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 23292576 - 23292639
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 126  Q
    |||||||||||||| |||||||||  | ||||||||  |||||||  |||||||||||||||||    
T  23292576 ataggctaaaatatatttttgatcatttcaaatataacgagtttggattttggtcctggtaaaa 23292639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 46073879 - 46073918
Alignment:
Q  60 taaataggctaaaatatgtttttgatccatgcaaatatag 99  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  46073879 taaataggctaaaatatgcttttgatccctgcaaatatag 46073918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 11710552 - 11710614
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||||||| || |||||||  ||| ||| |||||||| ||||||||||    
T  11710552 aggctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctggtaaaa 11710614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 47038865 - 47038927
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||  ||| |||||||||||  |||||| |||||||| ||||||||||    
T  47038865 aggctaaaatatgtttttagtccctgcaaatatagctagtttgggttttggtccctggtaaaa 47038927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 48856313 - 48856355
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacattt 210  Q
    |||||||||||||| |||||||| ||||||||||| |||||||    
T  48856313 aaaatagtccttggccccactttattgatgatttggcacattt 48856355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 37395632 - 37395685
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||||||| ||| ||||||||||| |  |||| ||||||||||    
T  37395632 aggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtcc 37395685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 48334194 - 48334141
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 116  Q
    ||||||||||||||| ||||| ||| | ||||||||| || |||||||||||||    
T  48334194 ataggctaaaatatgcttttggtccctacaaatatagcgaatttgagttttggt 48334141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 11711312 - 11711252
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 126  Q
    |||||||||||||||||| ||| ||||||||||| || |||| |||| |  ||||||||||    
T  11711312 ggctaaaatatgtttttggtccctgcaaatatagcgaatttgggtttggtccctggtaaaa 11711252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 20723644 - 20723588
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 224  Q
    |||||||||||||  ||||||||  |||||||||| | ||||| |||||||||||||    
T  20723644 aaaatagtccttgaccccactttactgatgatttggcccatttttgcatatgtggca 20723588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 23470028 - 23469988
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagttt 106  Q
    |||||||||||||||||| ||| ||||||||||| ||||||    
T  23470028 ggctaaaatatgtttttggtccctgcaaatatagcgagttt 23469988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 34934808 - 34934744
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc-tggtaaaat 127  Q
    |||||||||||||| ||||  ||| ||||||||||| || |||| |||||||||| |||||||||    
T  34934808 taggctaaaatatgctttttgtccctgcaaatatagcgaatttgggttttggtccttggtaaaat 34934744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 6044190 - 6044132
Alignment:
Q  68 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 126  Q
    |||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||    
T  6044190 ctaaaatatgattttgattcatgcaaatatgatgagtttgagttttggtcctggtaaaa 6044132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 3936577 - 3936639
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  3936577 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 3936639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 6893966 - 6893858
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    ||||||||| |||  |||||||| ||||||||||| ||||||| ||| ||||| ||||| ||||||| || ||  |||||||  || || ||| ||||||    
T  6893966 aaaatagtcattgaccccactttattgatgatttggcacatttatgcctatgtagcattcgctgactgtgtaagtttgtacatttggcagccacgtggta 6893867  T
Q  268 attatttta 276  Q
    |||||||||    
T  6893866 attatttta 6893858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 15604015 - 15603944
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgca 239  Q
    |||||||||||||||||||||||  |||||||||| || |||| ||| ||||| ||||| ||||||| ||||    
T  15604015 aaaatagtccttggacccactttactgatgatttggcatatttttgcctatgtagcattcgctgactgtgca 15603944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 27459554 - 27459489
Alignment:
Q  61 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 126  Q
    ||||||||||||||||| |||| |||| |||||||||||  ||||||| ||||| |||| ||||||    
T  27459554 aaataggctaaaatatgcttttaatccttgcaaatatagcaagtttgaattttgatcctcgtaaaa 27459489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 34910591 - 34910643
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 117  Q
    ||||||||||||||||||| |||| |||||||||||  ||||||||||||||||    
T  34910591 taggctaaaatatgttttt-atccctgcaaatatagcaagtttgagttttggtc 34910643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 3954050 - 3954113
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||||||| ||| ||||||||||  || |||| |||||||| ||||||||||    
T  3954050 taggctaaaatatgtttttggtccttgcaaatatatcgaatttgggttttggtccctggtaaaa 3954113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 31540488 - 31540555
Alignment:
Q  58 tataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaa 124  Q
    ||||| |||||||||||||||||||| ||| ||||||||||  || |||| |||||||| ||||||||    
T  31540488 tataattaggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtacctggtaa 31540555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 4565391 - 4565445
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||||  ||| | ||||||||| ||||||| ||||||||||    
T  4565391 taggctaaaatatgtttttagtccctacaaatatagcgagtttgggttttggtcc 4565445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 27570058 - 27570116
Alignment:
Q  68 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaa 126  Q
    |||||||||| ||||| ||| ||||||||||| ||||||| |||||| ||| |||||||    
T  27570058 ctaaaatatgattttggtccttgcaaatatagcgagtttgggttttgttcccggtaaaa 27570116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 27571189 - 27571127
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||| ||||| ||| ||||||||||| ||||||| |||||| | ||||||||||    
T  27571189 aggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttgatccctggtaaaa 27571127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 25252641 - 25252681
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagttt 106  Q
    |||||||||||||||||||||  ||||||||||| ||||||    
T  25252641 ggctaaaatatgtttttgatctctgcaaatatagcgagttt 25252681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 25316426 - 25316466
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagttt 106  Q
    |||||||||||||||||||||  ||||||||||| ||||||    
T  25316426 ggctaaaatatgtttttgatctctgcaaatatagcgagttt 25316466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 31541681 - 31541649
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatata 98  Q
    |||||||||||||||||||||| ||||||||||    
T  31541681 ggctaaaatatgtttttgatccctgcaaatata 31541649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 40038489 - 40038525
Alignment:
Q  61 aaataggctaaaatatgtttttgatccatgcaaatat 97  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  40038489 aaataggctaaaatatggttttgatccctgcaaatat 40038525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 1777468 - 1777530
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||    
T  1777468 aggctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctggtaaaa 1777530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 25977868 - 25977922
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  25977868 taggctaaaatatgtttttggtccctgcaaatatagtgagtttgggttttggtcc 25977922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 3924821 - 3924713
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||||||| |||||||| ||||||||||| ||||||| | | || ||||||||  |||||| || ||  |||||||  || || ||| ||||||    
T  3924821 aaaatagtccttggccccactttattgatgatttgacacatttattcctacgtggcattcactgactgtgtaagtttgtacatttggcagccacgtggta 3924722  T
Q  268 attatttta 276  Q
    |||||||||    
T  3924721 attatttta 3924713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 11088739 - 11088679
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttgg-tcctggtaaa 125  Q
    |||||||||||||||||  ||||||||||||||| || |||||||||||| ||||||||||    
T  11088739 ggctaaaatatgtttttcgtccatgcaaatatagcgaatttgagttttggttcctggtaaa 11088679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 2412489 - 2412426
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||| ||||| || ||||||||||    
T  2412489 taggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaa 2412426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 25979311 - 25979249
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| ||||||||||| || |||| |||||||| ||||||||||    
T  25979311 aggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctggtaaaa 25979249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 23863006 - 23862933
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaa 241  Q
    ||||||||| ||||||||||||| ||| |||||||||  |||| ||| ||||||||||  ||||||| ||||||    
T  23863006 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgctgactgtgcaaa 23862933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 23861749 - 23861813
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||||| ||| ||||||||| | |||||||  ||||||| ||||||||||    
T  23861749 ataggctaaaatatgtttttggtccctgcaaatatggagagtttggattttggtccctggtaaaa 23861813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 25282509 - 25282617
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    |||||||||||||  |||||||| ||||||||||| ||||||| ||| ||  |||||||  |||||| || ||  |||||||  || || ||| ||||||    
T  25282509 aaaatagtccttgaccccactttattgatgatttgacacatttatgcctacatggcattcactgactgtgtaagtttgtacatttggcagccacgtggta 25282608  T
Q  268 attatttta 276  Q
    |||||||||    
T  25282609 attatttta 25282617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 4038840 - 4038903
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||| ||||||||| || ||||||||| ||||||  ||||||| ||||||||||    
T  4038840 taggctaaaatatgattttgatccctgtaaatatagtaagtttggattttggtacctggtaaaa 4038903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 12068407 - 12068357
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagtttt 113  Q
    ||||||||||||||| ||||||||| ||||||||||| || ||| ||||||    
T  12068407 ataggctaaaatatgcttttgatccctgcaaatatagcgaatttaagtttt 12068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 36837842 - 36837776
Alignment:
Q  61 aaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||| |||||||| |||||| ||  ||||||||||| ||||||| |||||||| ||||||||||    
T  36837842 aaataggttaaaatatatttttggtctctgcaaatatagcgagtttgggttttggtccctggtaaaa 36837776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 11087049 - 11087102
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    |||||||||||| |||| |||| ||||||||||| |||||||  ||||||||||    
T  11087049 ggctaaaatatgattttaatccctgcaaatatagcgagtttggcttttggtcct 11087102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 19603735 - 19603799
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaat 127  Q
    ||||||| ||||||||||||| ||| ||||||||||     |||| |||||||||||||||||||    
T  19603735 ataggcttaaatatgtttttggtccctgcaaatataactcatttgggttttggtcctggtaaaat 19603799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 24749550 - 24749514
Alignment:
Q  174 gtccttggacccactttcttgatgatttgtcacattt 210  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  24749550 gtccttggacccactttcttgctgatttggcacattt 24749514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 25283331 - 25283283
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttg 114  Q
    |||||||||||||||||| ||  ||||||||||| || |||||||||||    
T  25283331 ggctaaaatatgtttttggtcactgcaaatatagcgaatttgagttttg 25283283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 29794377 - 29794326
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 116  Q
    |||||||||||||||||| | ||| ||||||||||| || |||||||||||||    
T  29794377 taggctaaaatatgttttgg-tccctgcaaatatagcgaatttgagttttggt 29794326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 1091 - 1022
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatg 237  Q
    ||||| |||||||| |||||||| ||||||||||| ||||||| ||| ||||||||||| ||||||||||    
T  1091 aaaattgtccttggccccactttattgatgatttggcacatttctgcctatgtggcattcgctgactatg 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 1194 - 1142
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||| |||||| ||  ||||||||| | ||||||||||||||||||    
T  1194 ggctaaaatatatttttggtctctgcaaatatggcgagtttgagttttggtcc 1142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 30970 - 30905
Alignment:
Q  62 aataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  30970 aataggctaaaatatggttttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 30905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 16573480 - 16573588
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggta 267  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||| ||| || |||||||| ||||||| || ||  |||||||  || || ||| ||||||    
T  16573480 aaaatagtctttggccccactttattgatgatttggcacatttatgcctacgtggcattcgctgactgtgtaagtttgtacatttgacagccacgtggta 16573579  T
Q  268 attatttta 276  Q
    |||||||||    
T  16573580 attatttta 16573588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 19674412 - 19674466
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||    
T  19674412 taggctaaaatatgcttttggtccttgcaaatatagcgagtttgagttttggtcc 19674466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 29060942 - 29060888
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    |||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||    
T  29060942 aggctaaaatatgtttttaatccctgcaaatatagcgagtttgaattttggtcct 29060888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 33137288 - 33137226
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||||||||    
T  33137288 aggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttagtccctggtaaaa 33137226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 41933808 - 41933871
Alignment:
Q  56 attataaataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    |||| ||||||||||||||||| ||||| ||  ||||||||||| ||||||| |||||||||||    
T  41933808 attaaaaataggctaaaatatgattttggtctctgcaaatatagcgagtttgggttttggtcct 41933871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 3879084 - 3879138
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||  |||||||||    
T  3879084 taggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtcc 3879138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 42358031 - 42358093
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||||||| ||| |||||||||||  ||||||||||||| | ||||||||||    
T  42358031 aggctaaaatatgtttttggtccctgcaaatataggaagtttgagttttgatccctggtaaaa 42358093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 3880556 - 3880503
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||||||| | | ||||||||||| ||||||| ||||||||||    
T  3880556 aggctaaaatatgtttttggttcctgcaaatatagcgagtttgggttttggtcc 3880503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 22204055 - 22204116
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| ||||| || ||||||||||    
T  22204055 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaa 22204116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 42359405 - 42359344
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||||||||| ||| ||||||||||| |||||||  ||||||| ||||||||||    
T  42359405 ggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctggtaaaa 42359344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 32699373 - 32699321
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||| ||| || |||||||| ||||||| ||||||||||    
T  32699373 ggctaaaatatgtttttggtccctgtaaatatagcgagtttgggttttggtcc 32699321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 38166493 - 38166545
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 116  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||  |||||||    
T  38166493 taggctaaaatatgtttttaatccctgcaaatatagcgagtttggattttggt 38166545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 45618283 - 45618346
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||| ||||| ||||| ||| ||||||||||| ||||||| |||||||| ||||||||||    
T  45618283 taggctaatatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 45618346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 41935025 - 41934983
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacattt 210  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||    
T  41935025 aaaatagtccttggacccactttgttgctgatttgacacattt 41934983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 41935126 - 41935068
Alignment:
Q  69 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcctggtaaaat 127  Q
    ||||||||||||||| ||| ||||||||||  ||||||| ||||||||| | |||||||    
T  41935126 taaaatatgtttttggtccctgcaaatataacgagtttgggttttggtcttagtaaaat 41935068  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 44705299 - 44705349
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt 116  Q
    |||||||||||||||||| ||  |||||||||||||| |||| ||||||||    
T  44705299 ggctaaaatatgtttttggtctctgcaaatatagtgaatttgggttttggt 44705349  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 16916069 - 16916118
Alignment:
Q  68 ctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtc 117  Q
    |||||||||  ||||| ||| ||||||||| |||||||||||||||||||    
T  16916069 ctaaaatatacttttggtccctgcaaatatggtgagtttgagttttggtc 16916118  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 33134889 - 33134922
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatat 97  Q
    |||||||||||||||||||||||| |||||||||    
T  33134889 taggctaaaatatgtttttgatccctgcaaatat 33134922  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 44706303 - 44706210
Alignment:
Q  183 cccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtggtaattatttta 276  Q
    |||||||| ||||||||||| ||||| | ||| || |||||||| ||||||| || ||  |||||||  || || ||| |||||||||||||||    
T  44706303 cccactttattgatgatttggcacatatatgcctacgtggcattcgctgactgtgtaagtttgtacatttgacagccacgtggtaattatttta 44706210  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 29415654 - 29415690
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtc 204  Q
    |||||||||||||||||||| |||||| |||||||||    
T  29415654 aaaatagtccttggacccaccttcttgctgatttgtc 29415690  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 30091117 - 30091053
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc-tggtaaaa 126  Q
    ||||||||||||||| ||||| |||||||||||||   |||||| ||||||| ||| ||||||||    
T  30091117 ataggctaaaatatggttttggtccatgcaaatatgacgagtttaagttttgatccatggtaaaa 30091053  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 54121762 - 54121698
Alignment:
Q  63 ataggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    ||||||||||||||| ||||| ||| ||||||||  | ||||||| |||||||| ||||||||||    
T  54121762 ataggctaaaatatgattttgctccctgcaaatacggcgagtttgggttttggtccctggtaaaa 54121698  T

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Target: scaffold0230 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 490 - 429
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||||||||    
T  490 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 429  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 374335 - 374387
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||    
T  374335 ggctaaaatatgattttgatccctgcaaatatagcgagtttgggttttggtcc 374387  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 345041 - 345107
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 234  Q
    |||||||||||||| |||||||| || |||||||| ||||||| ||| || |||||||| |||||||    
T  345041 aaaatagtccttggccccactttattaatgatttggcacatttatgcctacgtggcattcgctgact 345107  T

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Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 345958 - 345904
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||||||||| ||| ||||||||||| || |||| ||||||||||    
T  345958 taggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtcc 345904  T

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Target: scaffold0002; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 376430 - 376381
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagtttt 113  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||| |||||    
T  376430 taggctaaaatatgcttttggtccctgcaaatatagcgagtttgggtttt 376381  T

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Target: scaffold0562 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 9920 - 9974
Alignment:
Q  64 taggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||  |||||||||    
T  9920 taggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtcc 9974  T

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Target: scaffold0517 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 10315 - 10368
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcct 119  Q
    |||||||||||| ||||| ||| ||||||||||| || ||||||||||||||||    
T  10315 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtcct 10368  T

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Target: scaffold0517; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 10418 - 10510
Alignment:
Q  168 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatcca 260  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||  |||||   ||||||  ||||||| |||||| ||| ||||||    
T  10418 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatcca 10510  T

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Target: scaffold0517; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 11582 - 11529
Alignment:
Q  65 aggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||||||||||| ||| ||||||||||| |  |||| ||||||||||    
T  11582 aggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtcc 11529  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 119593 - 119645
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    |||||||||||| ||||| ||| ||||||||||| || |||||||||||||||    
T  119593 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtcc 119645  T

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Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 121044 - 120983
Alignment:
Q  66 ggctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggt-cctggtaaaa 126  Q
    |||||||||||| ||||| ||| ||||||||||  ||||||| |||||||| ||||||||||    
T  121044 ggctaaaatatgcttttggtccctgcaaatataacgagtttgggttttggtccctggtaaaa 120983  T

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Target: scaffold0095 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 42813 - 42762
Alignment:
Q  67 gctaaaatatgtttttgatccatgcaaatatagtgagtttgagttttggtcc 118  Q
    ||||||||||| ||||| ||| ||||||||| | ||||||||||||||||||    
T  42813 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtcc 42762  T

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Target: scaffold0765 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 1863 - 1908
Alignment:
Q  69 taaaatatgtttttgatccatgcaaatatagtgagtttgagttttg 114  Q
    ||||||||| ||||| ||| ||||||||||| ||||||||||||||    
T  1863 taaaatatgattttggtccctgcaaatatagcgagtttgagttttg 1908  T

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