View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_13 (Length: 590)
Name: NF1172_low_13
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 5897178 - 5897720
Alignment:
| Q |
1 |
tgagttagaaatataatattgctttaaaaagtgaatannnnnnnggagaaatttaaaaagtgaatattaaaaaatatataaattagagaacatataaact |
100 |
Q |
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| T |
5897178 |
tgagttagaaatataatattgctttaaaaagtgaatatttttttggagaaatttaaaaagtgaatattaagaaatatataaattagagaacatataaact |
5897277 |
T |
|
| Q |
101 |
aaatgcactaagggtttaaattaacacgtgatggagaactcacttatgtggttgctcccagattgccctcatgacccaattaaattcaaaatagacnnnn |
200 |
Q |
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| T |
5897278 |
aaatgcactaagggtttaaattaatatgtgatggagaactcacttatgtggttgctcccagattgccctcatgacccaattaaattcaaa-tagacaaaa |
5897376 |
T |
|
| Q |
201 |
nnnnngtactctacgtaaactgaacttaggcgtgatattttgaactcccctttgaaatttgttttgaacgacaaaatttattaacagttaaatctctcca |
300 |
Q |
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| T |
5897377 |
aaaaaatactctacgtaaactgaacttaggcgtgatattttgaactcccctttgaaatttgttttgaacgataaaatttattaatagttaaatctctcca |
5897476 |
T |
|
| Q |
301 |
caaaataaaagatcgacaagatatagaaacaataaaacaaacgtaagcagtaataaaaatgttcaaacaaatcaattaattaagatcacgcaaacaaatg |
400 |
Q |
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| T |
5897477 |
caaaataaaagatcgacaagatatagaaacaataaaacaaacgtaagcagtaataaaaatgttcaaacaaatcaattaattaagatcacgcaaacaaatg |
5897576 |
T |
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| Q |
401 |
ggaaccaacttgaagtaaagtcacgaaaaacctttgctctaagggctagtgaagtcacgagaaacttacacactcgatatataaatggatatacatcgag |
500 |
Q |
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| T |
5897577 |
ggaaccaacttgaagtaaagtcacgaaaaacctttgctctaagggctagtgaagtcacgagaaacttatacactcgatatataaatggatatacatcgag |
5897676 |
T |
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| Q |
501 |
ttaactaactagtggaagaacacaattatgtttatagttgaaac |
544 |
Q |
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| T |
5897677 |
ttaactaactagtggaagaacacaattatgtttatagttgaaac |
5897720 |
T |
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