View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_130 (Length: 279)
Name: NF1172_low_130
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_130 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 1039480 - 1039752
Alignment:
| Q |
7 |
gcaccacagaaaaccagcagcacctcaccaacagaacacccaccgccttaggctcatcccctcaacaaacagtcacgcggactccacaaccattcgtaaa |
106 |
Q |
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| T |
1039480 |
gcacaacagaaaaccagcagcacctcaccaacagaacacccaccgccttaggctcatcccctcaacaaacagtcacgcggactccacaaccattcgtaaa |
1039579 |
T |
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| Q |
107 |
ataagcacggctgaaaattgagtcttcccaacgcgcacttccaagacagcaacttaatatcaaaaaataagaacttcttgaactaataacggatcaacca |
206 |
Q |
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| T |
1039580 |
ataagcacggctgaaaattgagtcttcccaacgcgcacttccaagacagcagcttaatatcaaaaaataagaacttcttgaactaataacggatcaacca |
1039679 |
T |
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| Q |
207 |
gttcaactaaactaaggtccaaaaagaaatcaaaccaattgaagaaccttataatttctagttcgatccggtt |
279 |
Q |
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| T |
1039680 |
gttcaactaaactaaggtccaaaaagaaatcaaaccaattgaagaaccttataatttctagttcgatccggtt |
1039752 |
T |
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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 44656750 - 44656845
Alignment:
| Q |
72 |
caaacagtcacgcggactccacaaccattcgtaaaataagcacggctgaaaattgagtcttcccaacgcgcacttccaagacagcaacttaatatc |
167 |
Q |
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| T |
44656750 |
caaacagtcacgcggactccacaaccactcataatataaacacggctgaaaattgagtcttcccaacgcccacttccaggacaacaacttaatatc |
44656845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 38908332 - 38908240
Alignment:
| Q |
76 |
cagtcacgcggactccacaaccattcgtaaaataagcacggctgaaaattgagtcttccc-aacgcgcacttccaagacagcaacttaatatc |
167 |
Q |
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| T |
38908332 |
cagtctcgcagactccacaaccactcgtagaataaacaaggttgaaaattaattcttcccaaacgcccacttccacgacaacaacttgatatc |
38908240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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