View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_133 (Length: 277)
Name: NF1172_low_133
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_133 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 7224139 - 7224394
Alignment:
| Q |
22 |
catcatcactaacactgnnnnnnngcttactataagaaatcttcctagacctagaacgaaatatattgaatctctctatttctgcctaaaacgaagagat |
121 |
Q |
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| T |
7224139 |
catcatcactaacactgtttttttgcttactataagaaatcttcctagacctagaaccaaatatattgaatctctctatttctgcctaaaacgaagagat |
7224238 |
T |
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| Q |
122 |
atctgactcaagctcccaatggcattcatcataaggaagctctctccacttcacaagatattccttctcagaaccattgtccctgtattaaacaaaatat |
221 |
Q |
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| T |
7224239 |
atctgactcaagctcccaatggcattcatcataaggaagctctttccacttcacaagatattccttctcagcaccattgtccctgtattaaacaaaatat |
7224338 |
T |
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| Q |
222 |
tccttaacttgggaattttacgacattttcataaaaaagatggaataaaattactc |
277 |
Q |
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| T |
7224339 |
tccttaacttgggaattttacgacattttcataaaaaagatggaataaaattactc |
7224394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 2918623 - 2918877
Alignment:
| Q |
22 |
catcatcactaacactgnnnnnnngcttactataagaaatcttcctagacctagaacgaaatatattgaatctctctatttctgcctaaaacgaagagat |
121 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
2918623 |
catcatcactaacactgcctttttgcttacaataagaaatcttcctagacctagaacgaaatatattgaatctctctatttctgcctgaaacaaagagat |
2918722 |
T |
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| Q |
122 |
atctgactcaagctcccaatggcattcatcataaggaagctctctccacttcacaagatattccttctcagaaccattgtccctgtattaaacaaaatat |
221 |
Q |
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| T |
2918723 |
atctgactcaagctcccaatggcattcatcataaggaagctctttccacttcacaagatattccttctcagcaccatggtccctgtattaaacaaaatat |
2918822 |
T |
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| Q |
222 |
tccttaacttgggaattttacgacattttcataaaaaagatggaataaaattactc |
277 |
Q |
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| T |
2918823 |
tccataacttgggaa-tttatgacattttcatagaaaagatggaataaaattactc |
2918877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 49038038 - 49037919
Alignment:
| Q |
72 |
ctagaacgaaatatattgaatctctctatttctgcctaaaacgaagagatatctgactcaagctcccaatggcattcatcataaggaagctctctccact |
171 |
Q |
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|||||||||||| |||| ||||| |||||||| | || ||| | ||| ||||| |||||| ||||||| ||||||||||| ||||||||| |||||| |
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| T |
49038038 |
ctagaacgaaatctattaaatctttctatttccggctgaaatgcagaaatatcagactcagattcccaataacattcatcatatggaagctctttccact |
49037939 |
T |
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| Q |
172 |
tcacaagatattccttctca |
191 |
Q |
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|||| ||||||||| ||||| |
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| T |
49037938 |
tcaccagatattccctctca |
49037919 |
T |
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