View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_142 (Length: 267)
Name: NF1172_low_142
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_142 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 83 - 267
Target Start/End: Complemental strand, 33919187 - 33919003
Alignment:
| Q |
83 |
ttgcaataagggatcccatgcattcgtgctgccagcaatttggtaccgtccgattaagattaaatgactcagccttcaaacaagtttttaaatattttaa |
182 |
Q |
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| T |
33919187 |
ttgcaataagggatcccatgcattcatgctgccagcaatttggtaccgtccgattaagattaaatgactcagccttcaaacaagtttttaaatattttaa |
33919088 |
T |
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| Q |
183 |
aatgcgatttacctaggttaaaatatgtgttgcctgatgaaaattggacggtgaagatctgctaattgcgtgaatgtaggggatt |
267 |
Q |
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| T |
33919087 |
aatgcgatttacctaggttaaaatatgagttgcctgatgaaaattggacggtgaagatctgctaattgcgtgaatgtaggggatt |
33919003 |
T |
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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 35082183 - 35082396
Alignment:
| Q |
33 |
tgctaattggaaagtgcagatatccaaccaaacactagaaaacgag------tttcttgcaataagggatcccatgcattcgtgctgccagcaatttggt |
126 |
Q |
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| T |
35082183 |
tgctaattggacagtgcagatatccaaccaaacactagaaaatgaaaatggatttcttgcaataagggatcagatgcattcatgctgtcagcaacttggt |
35082282 |
T |
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| Q |
127 |
accgtccgattaagattaaatgactcagccttcaaacaagtttttaaatattttaaaatgcgatttacctaggttaaaatatgtgttgcctgatgaaaat |
226 |
Q |
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||| ||| |||||||| ||| | |||| ||| ||||||||||| |||||||| ||||| |||||||| ||||||||||| | |||| | |||||||| |
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| T |
35082283 |
accttccaattaagatcaaacaattcagatttcgaacaagttttt-aatatttttaaatgtgatttaccgaggttaaaataagagttgtccaatgaaaat |
35082381 |
T |
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| Q |
227 |
tggacggtgaagatc |
241 |
Q |
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| T |
35082382 |
tggatggtgaagatc |
35082396 |
T |
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