View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_143 (Length: 263)
Name: NF1172_low_143
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_143 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 1554301 - 1554068
Alignment:
| Q |
30 |
ataagtgtaataataaactaactagttgacaaatacaattacagcatgagaatatatctgtttcaactatagttctataagaaacaaaattatacataga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1554301 |
ataagtgtaataataaactaactagttgacaaatacaattacagcatgagaatatatctgtttcaactatagttctataagaaacaaaattatacataga |
1554202 |
T |
|
| Q |
130 |
atac-aacaaattaatatgtcatcaaaataaaataaaattagtgcatgtatcagcttctttcaagctcaaacacttcaaaatggatgatgtatcggtata |
228 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| || |
|
|
| T |
1554201 |
atacaaacaaattaatatgtcatcaaaataaaataaagttagtgcatgtatcagctt-tttgaagctcaaacacttcaaaatggatgatgtaccggttta |
1554103 |
T |
|
| Q |
229 |
cgatacgtattctgccccgatacctgctcgatatg |
263 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1554102 |
cgatacgtattctgcaccgatacttgctcgatatg |
1554068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 40694082 - 40694134
Alignment:
| Q |
201 |
acttcaaaatggatgatgtatcggtatacgatacgtattctgccccgatacctg |
254 |
Q |
| |
|
|||||||||||||||||||||| |||| | || |||||||||| |||||||||| |
|
|
| T |
40694082 |
acttcaaaatggatgatgtatc-gtatcccatgcgtattctgcaccgatacctg |
40694134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University