View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_146 (Length: 259)

Name: NF1172_low_146
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_146
NF1172_low_146
[»] chr3 (2 HSPs)
chr3 (146-243)||(45209724-45209821)
chr3 (1-68)||(45209580-45209645)
[»] chr5 (2 HSPs)
chr5 (150-243)||(674841-674933)
chr5 (1-67)||(675003-675067)
[»] chr4 (2 HSPs)
chr4 (173-243)||(27750159-27750228)
chr4 (1-67)||(27749598-27749659)
[»] chr6 (1 HSPs)
chr6 (164-240)||(22352476-22352552)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 45209724 - 45209821
Alignment:
Q  146 gtctgagtaacacaaagctattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45209724 gtctgagtaacacaaagctattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta 45209821  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 45209580 - 45209645
Alignment:
Q  1 atgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggtttc 68  Q
    ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  45209580 atgaagtgggggagaattcaaaacaagatacaatatgagttg--tataaattgcaaagataaggtttc 45209645  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 674933 - 674841
Alignment:
Q  150 gagtaacacaaagctattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta 243  Q
    |||||| |||||| ||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  674933 gagtaatacaaagatatttggtcttccattcttgctcaccatgtcagcttctatctt-gcaaatttcatagcaattggtttatattgttaacta 674841  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 675067 - 675003
Alignment:
Q  1 atgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggttt 67  Q
    ||||||||| |||||||||||||||||||| || ||||||||  |||||||||||||||| ||||||    
T  675067 atgaagtggaggagaattcaaaacaagatataacaagagttg--tataaattgcaaagatgaggttt 675003  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 27750159 - 27750228
Alignment:
Q  173 ttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta 243  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27750159 ttccattcttgctcaccatgtcagcttctatctt-gcaaatttcatagcaattgatttatattgttaacta 27750228  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27749598 - 27749659
Alignment:
Q  1 atgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggttt 67  Q
    ||||||||| | ||||||||||||||||||   |||||||||||||  |||||||||||||||||||    
T  27749598 atgaagtggagaagaattcaaaacaagata---taagagttgtata--aattgcaaagataaggttt 27749659  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 22352552 - 22352476
Alignment:
Q  164 tattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaa 240  Q
    ||||| || ||||||||| | ||||||||||| |||||||| || |||||| |||||||||||||||| | ||||||    
T  22352552 tatttggtcttccattcttgttcaccatgtcaacttctatcgtaccaaattgcatagcaattgatttaaaatgttaa 22352476  T

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