View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_15 (Length: 584)

Name: NF1172_low_15
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_15
NF1172_low_15
[»] chr2 (34 HSPs)
chr2 (84-584)||(39412644-39413133)
chr2 (356-584)||(39472638-39472868)
chr2 (354-584)||(39153137-39153369)
chr2 (394-569)||(39396566-39396741)
chr2 (394-584)||(39371195-39371385)
chr2 (394-584)||(39216735-39216925)
chr2 (350-584)||(39138724-39138959)
chr2 (401-583)||(44895028-44895210)
chr2 (104-289)||(39153506-39153693)
chr2 (84-284)||(39472261-39472461)
chr2 (394-492)||(39421100-39421198)
chr2 (387-583)||(39387401-39387597)
chr2 (394-584)||(39196424-39196614)
chr2 (394-584)||(39380408-39380598)
chr2 (394-577)||(39223796-39223979)
chr2 (139-284)||(39139147-39139292)
chr2 (201-284)||(39452533-39452616)
chr2 (394-493)||(2362848-2362947)
chr2 (30-84)||(39412642-39412696)
chr2 (531-583)||(39188805-39188857)
chr2 (520-584)||(39205782-39205846)
chr2 (426-493)||(39099756-39099823)
chr2 (30-84)||(39453318-39453372)
chr2 (410-490)||(39425463-39425543)
chr2 (394-450)||(44615630-44615686)
chr2 (540-584)||(44624860-44624904)
chr2 (30-69)||(39139288-39139327)
chr2 (426-493)||(39503988-39504055)
chr2 (394-493)||(39604485-39604584)
chr2 (531-581)||(31606558-31606608)
chr2 (406-492)||(39144766-39144852)
chr2 (125-171)||(39421035-39421081)
chr2 (522-584)||(44615487-44615549)
chr2 (410-462)||(39493369-39493421)
[»] chr7 (3 HSPs)
chr7 (350-584)||(19808981-19809216)
chr7 (139-250)||(19809437-19809548)
chr7 (30-69)||(19809544-19809583)
[»] chr5 (2 HSPs)
chr5 (394-584)||(33562367-33562557)
chr5 (394-584)||(17060724-17060914)
[»] chr6 (1 HSPs)
chr6 (390-484)||(16114545-16114639)
[»] chr8 (4 HSPs)
chr8 (438-489)||(45343138-45343189)
chr8 (201-284)||(45343282-45343365)
chr8 (540-584)||(44730193-44730237)
chr8 (406-474)||(44949821-44949889)
[»] scaffold0283 (1 HSPs)
scaffold0283 (406-474)||(5801-5869)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 84 - 584
Target Start/End: Original strand, 39412644 - 39413133
Alignment:
Q  84 aaagaaccagacaccatttaaagaaaacaaatttgcaaaacttgcaaaccatatttgaaacacagttctaagattcagcattctcaaagtaggatatcaa 183  Q
    ||||||||| ||||||  |||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39412644 aaagaaccaaacaccaaataaagaaaacaaatgtgaaaaacttgcaaaccatatttgaaacacggttctaagattcagcattctcaaagtaggatatcaa 39412743  T
Q  184 attcgaacctattaaaaaacatctgtacaatcacacaaatatgttgtatataattttttctcaagcaccgatagctaacacttgcaatatgaatttaaga 283  Q
    |||| |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39412744 attcaaacctattcaaaaacatctgtacaatcacaca--tatgttgtatataattttttctcaaacaccgatagctaacacttgcaatatgaatttaaga 39412841  T
Q  284 gtaggtacaatcacacttgcaatatggatttgataattctatggtctaacataccatagaatagagaaaaagagagatatcggtgac-tgaccaaagcat 382  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||        ||||||| ||||||||| |||||||||| |    
T  39412842 gaaggtacaatcacacttgcaatatggatttgataattctatggtctaacatgccaaagaat--------agagagaaatcggtgacttgaccaaagcgt 39412933  T
Q  383 aaataaaaacgtaccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagact 482  Q
    |||||||||| |||||||||  || ||||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |    
T  39412934 aaataaaaacataccagaaa--ctttttgcaaaacccagggttccaaacagcttcgcagctatcttgtgttgagcaacaaatgcaaaaagctccaagatt 39413031  T
Q  483 tcatcttcatcnnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagctt 582  Q
    |||||||||||       |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  39413032 tcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagagttttcggtattttctttcaagttagctt 39413131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 356 - 584
Target Start/End: Original strand, 39472638 - 39472868
Alignment:
Q  356 agagatatcggtgactgaccaaagcataaataaa--aacgtaccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgct 453  Q
    |||||||  |||||||||||||| ||||  ||||  ||  |||| |||| | ||||||||||||||| ||||| |||||| | |||||||||||||||||    
T  39472638 agagatacaggtgactgaccaaaccatatctaaattaaaatacctgaaagtttatttgcaaaacccaaggtccgaaacagttccacagctatcttgtgct 39472737  T
Q  454 gagcaacaaatgcaaaaagctccaagacttcatcttcatcnnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaaga 553  Q
    ||||||||||||| || |||||||||||||||||||||||       |||| |||  || ||| | |||||||||  ||||||| |||||| ||||||||    
T  39472738 gagcaacaaatgcgaagagctccaagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaaga 39472837  T
Q  554 gttttcagtattttctttcatgttagctttc 584  Q
     |||||||||||||||||||||||| |||||    
T  39472838 attttcagtattttctttcatgttaactttc 39472868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 354 - 584
Target Start/End: Complemental strand, 39153369 - 39153137
Alignment:
Q  354 agagagatatcggtgactgaccaaagcataaataaa--aacgtaccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtg 451  Q
    ||||||| | || ||||||||||||||||   ||||  ||| ||||||||||| ||||||||||||||| ||||| ||| || | ||||||  |||||||    
T  39153369 agagagagaccgatgactgaccaaagcatgtctaaattaacataccagaaactttatttgcaaaacccagggtccgaaatagttccacagcagtcttgtg 39153270  T
Q  452 ctgagcaacaaatgcaaaaagctccaagacttcatcttcatcnnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaa 551  Q
     ||||||||||||||||||||||||||||||||||||| |||       |||||||| ||| |||   |||||| ||  ||||||| |||||||||||||    
T  39153269 ttgagcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaa 39153170  T
Q  552 gagttttcagtattttctttcatgttagctttc 584  Q
    || ||||||||||||||||| || |||||||||    
T  39153169 gaattttcagtattttcttttattttagctttc 39153137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 394 - 569
Target Start/End: Original strand, 39396566 - 39396741
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||||||||| ||||||||||||||| |||| ||||||||| || |||| ||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  39396566 taccagaaactttatttgcaaaacccagggtctcaaacagctccatagctgtcttgtgctgagcaaccgatgcaaaaagctccaaaacttcatcttcatc 39396665  T
Q  494 nnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttct 569  Q
           |||| ||| ||| ||| | |||||||||||| ||||| ||||||| ||||||| |||||||||||||||    
T  39396666 gaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttct 39396741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 394 - 584
Target Start/End: Complemental strand, 39371385 - 39371195
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    |||||||| || | || |||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  39371385 taccagaagctttgttggcaaaacccatggttccaaacagctccatagctatcttgtgctcagcaacaaatgcaaaaagctccaaaagttcatcttcatc 39371286  T
Q  494 nnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
           |||||||| ||| ||  | |||||||||| ||||||| ||||||||||||||  |||| | |||||||||||||||| ||||||    
T  39371285 aaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggctttc 39371195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 394 - 584
Target Start/End: Complemental strand, 39216925 - 39216735
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||||||||| ||||||||||||||| |||| ||||||| |  | |||||||||||||||||||||| |||||||||||||||| |||||||||||| |    
T  39216925 taccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcacc 39216826  T
Q  494 nnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
           |||||||| ||| ||| | |||||||||  |||||||  |||||||||||||| |||| |||||||||  ||||||||| ||||    
T  39216825 aaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtattttcactcatgttagatttc 39216735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 350 - 584
Target Start/End: Complemental strand, 39138959 - 39138724
Alignment:
Q  350 aaaaagagagatatcggtgactgaccaaagcat----aaataaaaacgtaccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctat 445  Q
    |||| |||||||| ||||||||||||||| |||    |||| ||||| |||| |||| | ||||||||||||||| ||||  |||||| | ||||||| |    
T  39138959 aaaaggagagataccggtgactgaccaaaccatgtctaaattaaaacatacctgaaagtttatttgcaaaacccagggtcttaaacagttccacagctgt 39138860  T
Q  446 cttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatcnnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaacc 545  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||       |||| |||  || ||||| |||||| ||  |||||||  ||||||    
T  39138859 cttgtgctgagcaacaaatgtgaaaagctccaagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaacc 39138760  T
Q  546 accaaagagttttcagtattttctttcatgttagctttc 584  Q
    |||| ||| |||||||||||   ||||||||||||||||    
T  39138759 accagagaattttcagtatt---tttcatgttagctttc 39138724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 401 - 583
Target Start/End: Original strand, 44895028 - 44895210
Alignment:
Q  401 aactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatcnnnnnnn 500  Q
    |||| ||| ||||||||| | ||||| ||| || | |||||||||||||||||||||||||||||||||||||||||| |||||  |||||||           
T  44895028 aactttatgtgcaaaaccgagggtccgaaaaagttccacagctatcttgtgctgagcaacaaatgcaaaaagctccaaaacttcgccttcatcgaaagaa 44895127  T
Q  501 gtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagcttt 583  Q
    |||| ||| ||| ||| | |||||||||  ||||||| ||||||||||||||| |||||||||||| |||| |||||||||||    
T  44895128 gtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagcttt 44895210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 104 - 289
Target Start/End: Complemental strand, 39153693 - 39153506
Alignment:
Q  104 aagaaaacaaatttgcaaaacttgcaaaccatatttgaaacacagttctaagattcagcattctcaaagtaggatatcaaattcgaacctattaaaaaac 203  Q
    |||||||| ||| || || ||||| |||||||||||||||||   ||||||||||||  ||||||||| ||| |||| ||||| |||| |||| || |||    
T  39153693 aagaaaacgaatgtgaaacacttgtaaaccatatttgaaacatgtttctaagattcaaaattctcaaaatagaatattaaatttgaacgtattcaagaac 39153594  T
Q  204 atctgtacaatcacacaaatatgttgtatataatt--ttttctcaagcaccgatagctaacacttgcaatatgaatttaagagtaggt 289  Q
    ||  ||||  ||||||||||||||| |||||||||  ||||||||||||  |||||| ||||||||||||||||||||||||| ||||    
T  39153593 attcgtacgttcacacaaatatgttttatataattttttttctcaagcattgatagccaacacttgcaatatgaatttaagagaaggt 39153506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 84 - 284
Target Start/End: Original strand, 39472261 - 39472461
Alignment:
Q  84 aaagaaccagacaccatttaaagaaaacaaatttgcaaaacttgcaaaccatatttgaaacacagttctaagattcagcattctcaaagtaggatatcaa 183  Q
    ||||||||||||| || |||| ||||||| || || || ||||||||||||||||| |||||| ||||||||||||  |||||||||| |||||||| ||    
T  39472261 aaagaaccagacatcaattaa-gaaaacagatgtgaaacacttgcaaaccatatttcaaacacggttctaagattccacattctcaaaataggatataaa 39472359  T
Q  184 attcgaacctattaaaaaacatctgtacaatcacacaaatatgttgtatataa-ttttttctcaagcaccgatagctaacacttgcaatatgaatttaag 282  Q
    |||| ||  |||| || ||||  |||||||| ||||||||||||| ||| ||| |||||||||||||| |   |||||||||||||||| || |||| ||    
T  39472360 attcaaaaatattcaataacaattgtacaatgacacaaatatgttttatttaatttttttctcaagcatcagcagctaacacttgcaatttggattttag 39472459  T
Q  283 ag 284  Q
    ||    
T  39472460 ag 39472461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 394 - 492
Target Start/End: Original strand, 39421100 - 39421198
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcat 492  Q
    ||||||||||| ||||||||||||||| |||| |||||| ||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39421100 taccagaaactttatttgcaaaacccagggtctcaaacaactcaactgctatcttgtgctgagcaacaaatgcaaaaagctccaacacttcatcttcat 39421198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 387 - 583
Target Start/End: Original strand, 39387401 - 39387597
Alignment:
Q  387 aaaaacgtaccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcat 486  Q
    |||||| |||| |||||||| |||||||||||||   | ||||| |||| |||||| || | ||||  |||||||||||||||||||||||| |||||||    
T  39387401 aaaaacatacctgaaactctgtttgcaaaacccagacttccaaatagctccacagcaatttcgtgcatagcaacaaatgcaaaaagctccaaaacttcat 39387500  T
Q  487 cttcatcnnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagcttt 583  Q
    |||| ||         || || |||| ||| | ||||||||| |||||||| ||||||  ||||||| |||||||||||||||||||||||||||||    
T  39387501 cttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttagcttt 39387597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 394 - 584
Target Start/End: Original strand, 39196424 - 39196614
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||||||||||| ||||||||||||| | | |||||||||| ||| || || |||| | ||||||||||||||||||||||||| ||||||||||||||    
T  39196424 taccagaaactctgtttgcaaaacccaggcttccaaacagctccaccgcaatattgttcagagcaacaaatgcaaaaagctccaaaacttcatcttcatc 39196523  T
Q  494 nnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
             || |||   | ||| | ||||||||| |||||| | ||||||| ||||||| ||||||||||| || |||||||||||||||    
T  39196524 aaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtattgtcattcatgttagctttc 39196614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 394 - 584
Target Start/End: Original strand, 39380408 - 39380598
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||||||||| ||||||||||||||| || || ||||| || || ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  39380408 taccagaaactatatttgcaaaacccagggcccgaaacatctccatagctatcttgtgctgagcaaccaatgcaaaaagctccaaaatttcatcttcatc 39380507  T
Q  494 nnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
           |||| ||| ||| ||| | |||||||||  ||||| | ||||||| ||| ||| | ||||||||| ||| | |||| |||||||    
T  39380508 gaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagctttc 39380598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 394 - 577
Target Start/End: Complemental strand, 39223979 - 39223796
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||||||||||| ||||||||||||| |   |||||||||| |||||| || |||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  39223979 taccagaaactctgtttgcaaaacccaggcatccaaacagctccacagcaattttgtgcagagcaacaaatgcaaaaagatccagaacttcatcttcatc 39223880  T
Q  494 nnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgtt 577  Q
             || |||   | ||| | ||||||||| |||||||| ||||||| ||||||| ||||||||||| |||||||||||    
T  39223879 aaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtt 39223796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 139 - 284
Target Start/End: Complemental strand, 39139292 - 39139147
Alignment:
Q  139 tgaaacacagttctaagattcagcattctcaaagtaggatatcaaattcgaacctattaaaaaacatctgtacaatcacacaaatatgttgtatataatt 238  Q
    |||||||| ||||||||| ||  |||||||||| |||||||| ||||| ||||||  | || ||||| |||| ||||||| |||||||||| ||||||||    
T  39139292 tgaaacacggttctaagagtccacattctcaaaataggatataaaatttgaacctcatcaagaacatttgtataatcacataaatatgttgcatataatt 39139193  T
Q  239 ttttctcaagcaccgatagctaacacttgcaatatgaatttaagag 284  Q
    |||||||||||| | | || |||||||  ||||||| ||| |||||    
T  39139192 ttttctcaagcatcaagagataacactaacaatatggattcaagag 39139147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 39452616 - 39452533
Alignment:
Q  201 aacatctgtacaatcacacaaatatgttgtatataattttttctcaagcaccgatagctaacacttgcaatatgaatttaagag 284  Q
    ||||| |||||| ||||||||||||| || ||||||||||||| |||||| | |||||||||  ||||||||| ||||||||||    
T  39452616 aacatttgtacagtcacacaaatatgatgaatataattttttcccaagcatcaatagctaacggttgcaatattaatttaagag 39452533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 2362947 - 2362848
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||||||||| ||| ||| |||||||| |||||||||||||  |||| ||||||||| |||||| ||||  |||||||||  || | ||||||||||||    
T  2362947 taccagaaactttatgtgccaaacccatagtcccaaacagctctacagatatcttgtgttgagcagcaaacccaaaaagctttaaaatttcatcttcatc 2362848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 39412642 - 39412696
Alignment:
Q  30 ccaaagaatcagacaccaaattaagaaaacaaatgtgaaaaacttgcaagccata 84  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||| |||||    
T  39412642 ccaaagaaccaaacaccaaataaagaaaacaaatgtgaaaaacttgcaaaccata 39412696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 531 - 583
Target Start/End: Original strand, 39188805 - 39188857
Alignment:
Q  531 agaaaactaagaaccaccaaagagttttcagtattttctttcatgttagcttt 583  Q
    ||||||| ||||||||||||||| ||| || ||||||||||||||||||||||    
T  39188805 agaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttt 39188857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 520 - 584
Target Start/End: Original strand, 39205782 - 39205846
Alignment:
Q  520 acaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
    |||||||||  ||||||| ||||||| ||| ||| |||||||||||||||||||| |||||||||    
T  39205782 acaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttagctttc 39205846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 493
Target Start/End: Complemental strand, 39099823 - 39099756
Alignment:
Q  426 ccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||| ||||| ||||||||||||||||||||| ||||  |||||||||  || ||||||||||||||    
T  39099823 ccaaagagctttacagctatcttgtgctgagcagcaaacccaaaaagctttaaaacttcatcttcatc 39099756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 39453372 - 39453318
Alignment:
Q  30 ccaaagaatcagacaccaaattaagaaaacaaatgtgaaaaacttgcaagccata 84  Q
    |||||||| |||||||||||||||||||||| ||| |||| |||||||| |||||    
T  39453372 ccaaagaagcagacaccaaattaagaaaacagatgagaaacacttgcaaaccata 39453318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 490
Target Start/End: Original strand, 39425463 - 39425543
Alignment:
Q  410 tgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttc 490  Q
    |||||||||||||| |||||||||||  |||||||  |||||||||| ||||| | | ||||||| ||| ||||| |||||    
T  39425463 tgcaaaacccatggccccaaacagctctacagctaagttgtgctgagaaacaagttcgaaaagcttcaaaacttcttcttc 39425543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 44615686 - 44615630
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgt 450  Q
    ||||||| ||| |||||||||||||||  |||| | |||||||||||||||||||||    
T  44615686 taccagagactttatttgcaaaacccagtgtcctacacagcttcacagctatcttgt 44615630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 540 - 584
Target Start/End: Complemental strand, 44624904 - 44624860
Alignment:
Q  540 agaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||    
T  44624904 agaacctccaaataattttcagtattttctttcatgttagctttc 44624860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 39139327 - 39139288
Alignment:
Q  30 ccaaagaatcagacaccaaattaagaaaacaaatgtgaaa 69  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  39139327 ccaaagaaccagacaccaaattaagaaaacagatgtgaaa 39139288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 493
Target Start/End: Original strand, 39503988 - 39504055
Alignment:
Q  426 ccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||||||||  |||||||||| |||||||||| ||||  |||||||||  || ||||||||||||||    
T  39503988 ccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatcttcatc 39504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 39604584 - 39604485
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    |||||||| || |||  ||||||||||  || ||||||||||  ||||||||||||| ||||||| ||||  | |||||||  || ||||||||||||||    
T  39604584 taccagaagctttatcggcaaaacccagagttccaaacagctctacagctatcttgtcctgagcagcaaactcgaaaagctttaaaacttcatcttcatc 39604485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 581
Target Start/End: Original strand, 31606558 - 31606608
Alignment:
Q  531 agaaaactaagaaccaccaaagagttttcagtattttctttcatgttagct 581  Q
    ||||||| ||||||||||||||| |||  | ||||||||||||||||||||    
T  31606558 agaaaaccaagaaccaccaaagaatttctattattttctttcatgttagct 31606608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 39144852 - 39144766
Alignment:
Q  406 tatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcat 492  Q
    |||||||||| |||| || |||||||||||  |||||||| | |||||||| ||||| | |||||||||  || || ||||||||||    
T  39144852 tatttgcaaatcccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccaaaaagctttaaaacatcatcttcat 39144766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 39421035 - 39421081
Alignment:
Q  125 ttgcaaaccatatttgaaacacagttctaagattcagcattctcaaa 171  Q
    |||||||||||||||||||||  ||||||||||||| |||| |||||    
T  39421035 ttgcaaaccatatttgaaacatggttctaagattcaacattatcaaa 39421081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 584
Target Start/End: Complemental strand, 44615549 - 44615487
Alignment:
Q  522 aaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
    |||| ||| ||||| | |||| || ||||||| ||||| ||||||||||||||||||||||||    
T  44615549 aaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttc 44615487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 39493369 - 39493421
Alignment:
Q  410 tgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaa 462  Q
    |||||||||||||| ||||||||||| |||| | || |||||||||| |||||    
T  39493369 tgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaa 39493421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 350 - 584
Target Start/End: Complemental strand, 19809216 - 19808981
Alignment:
Q  350 aaaaagagagatatcggtgactgaccaaagca----taaataaaaacgtaccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctat 445  Q
    ||||||||||||||||||||||||||| | ||    ||||| ||||| |||| |||| | ||||||||||||||| ||||  |||||| | ||| ||| |    
T  19809216 aaaaagagagatatcggtgactgaccagaccatatctaaattaaaacatacctgaaagtttatttgcaaaacccagggtctgaaacagttccacggctgt 19809117  T
Q  446 cttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatcnnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaacc 545  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||       |||| |||  || ||||| |||||||||  ||||||| |||||||    
T  19809116 cttgtgctgagcaacaaatgcgaaaagctccaagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaacc 19809017  T
Q  546 accaaagagttttcagtattttctttcatgttagctttc 584  Q
    |||| ||| ||||||||| |   ||||||||||||||||    
T  19809016 accagagaattttcagtact---tttcatgttagctttc 19808981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 19809548 - 19809437
Alignment:
Q  139 tgaaacacagttctaagattcagcattctcaaagtaggatatcaaattcgaacctattaaaaaacatctgtacaatcacacaaatatgttgtatataatt 238  Q
    |||||||| ||||||||||||  |||||||||| |||||||| ||||| ||||||  | || ||||| |||| |||||||||||||||||||||||||||    
T  19809548 tgaaacacggttctaagattccacattctcaaattaggatataaaatttgaacctcatcaagaacatttgtataatcacacaaatatgttgtatataatt 19809449  T
Q  239 ttttctcaagca 250  Q
    ||||||||||||    
T  19809448 ttttctcaagca 19809437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 19809583 - 19809544
Alignment:
Q  30 ccaaagaatcagacaccaaattaagaaaacaaatgtgaaa 69  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  19809583 ccaaagaaccagacaccaaattaagaaaacagatgtgaaa 19809544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 394 - 584
Target Start/End: Complemental strand, 33562557 - 33562367
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||||||||||| ||||||||||||| | |  ||||||||| ||| || || |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  33562557 taccagaaactctgtttgcaaaacccaggctttcaaacagctccacggcaattttgtgcagagcaacaaatgcaaaaagctccaaaacttcatcttcatc 33562458  T
Q  494 nnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
             || |||   | ||| | ||||||||| |||||||| ||||||| ||||| |   ||||||||||||||||||||||||||||    
T  33562457 aaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaaaattcagtattttctttcatgttagctttc 33562367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 394 - 584
Target Start/End: Complemental strand, 17060914 - 17060724
Alignment:
Q  394 taccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatcttcatc 493  Q
    ||||||| ||| ||||||||||||| |   || ||||||||| ||||| ||||||||||| ||||||| |||||||||| |||||||||||||||| |||    
T  17060914 taccagacactttatttgcaaaacctagtttctcaaacagctccacagatatcttgtgctcagcaacagatgcaaaaagatccaagacttcatcttgatc 17060815  T
Q  494 nnnnnnngtaaccaacccacaaactaacaaaagcaacagaaaactaagaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
           |||| ||| ||| ||||  |||| | ||||||||| |  |||||| |||| || | |||||||||| |||| ||||||||||||    
T  17060814 aaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaatattcagtatttgcttttatgttagctttc 17060724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 390 - 484
Target Start/End: Complemental strand, 16114639 - 16114545
Alignment:
Q  390 aacgtaccagaaactctatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttc 484  Q
    |||||||||||| || ||||||||||||| | |||| ||||||||| || | || ||||||||||||||||| |||||||||||||||| |||||    
T  16114639 aacgtaccagaagctttatttgcaaaaccgagggtctcaaacagctccataactgtcttgtgctgagcaacagatgcaaaaagctccaaaacttc 16114545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 489
Target Start/End: Complemental strand, 45343189 - 45343138
Alignment:
Q  438 acagctatcttgtgctgagcaacaaatgcaaaaagctccaagacttcatctt 489  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||||||||    
T  45343189 acagatatcttgtgctgaacaacagatacaaaaagctccaagacttcatctt 45343138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 45343365 - 45343282
Alignment:
Q  201 aacatctgtacaatcacacaaatatgttgtatataattttttctcaagcaccgatagctaacacttgcaatatgaatttaagag 284  Q
    ||||| ||||||| |||||||||||||| || |||| ||||||||||  | | || |||||||||| ||||||| |||||||||    
T  45343365 aacatttgtacaaccacacaaatatgttctacataagtttttctcaaaaatcaatggctaacactttcaatatggatttaagag 45343282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 540 - 584
Target Start/End: Complemental strand, 44730237 - 44730193
Alignment:
Q  540 agaaccaccaaagagttttcagtattttctttcatgttagctttc 584  Q
    |||||| || |||| ||||||||||||||||| ||||||||||||    
T  44730237 agaacctcctaagaattttcagtattttcttttatgttagctttc 44730193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 44949821 - 44949889
Alignment:
Q  406 tatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagct 474  Q
    ||||| ||||| ||| ||||| ||||| |||||||||||| ||||| | ||||||| ||||| ||||||    
T  44949821 tatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagcaacagatgcataaagct 44949889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 5801 - 5869
Alignment:
Q  406 tatttgcaaaacccatggtcccaaacagcttcacagctatcttgtgctgagcaacaaatgcaaaaagct 474  Q
    ||||| ||||| ||| ||||| ||||| |||||||||||| ||||| | ||||||| ||||| ||||||    
T  5801 tatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagcaacagatgcataaagct 5869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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