View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_151 (Length: 252)
Name: NF1172_low_151
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_151 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 1978366 - 1978131
Alignment:
| Q |
17 |
gggaagttttgtcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaatcaaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1978366 |
gggaagttttgtcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaatcaaat |
1978267 |
T |
|
| Q |
117 |
tccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgattttcatgtttataggtttgttaaaacaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1978266 |
tccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgattttcatgtttataggtttgtttaaacaa |
1978167 |
T |
|
| Q |
217 |
acttcacctttcaagatgattgaaaagtttccaagc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1978166 |
acttcacctttcaagatgattgaaaagtttccaagc |
1978131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 252
Target Start/End: Original strand, 1948054 - 1948275
Alignment:
| Q |
31 |
agcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaatcaaattccattaatggttt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||| | |||| |
|
|
| T |
1948054 |
agcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgatgttgagagacattgttatgctcgagaatcaaattccgttatttgttt |
1948153 |
T |
|
| Q |
131 |
tgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgattttcatgtttataggtttgttaaaacaaacttcacctttcaa |
230 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1948154 |
tgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaatgttgattttcatgtttataggtttgtttaaacaaacttcacctttcaa |
1948253 |
T |
|
| Q |
231 |
gatgattgaaaagtttccaagc |
252 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
1948254 |
gatgattgaagagtttccaagc |
1948275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 1985226 - 1985058
Alignment:
| Q |
75 |
taatgcaatgttgaaagacattgttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagttcaaactc---tcatcaaaagaagct |
171 |
Q |
| |
|
||||||||| |||| || ||||| |||||||||||||||||||||||| | ||||||||||| |||||||||| ||| || |||||| ||||| | |
|
|
| T |
1985226 |
taatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattcttttcatcagaagaaaat |
1985127 |
T |
|
| Q |
172 |
gctgatgaaatgttgattttcatgtttataggtttgttaaaacaaacttcacctttcaagatgattgaa |
240 |
Q |
| |
|
|||||||| ||||||| || |||| |||| | ||||| ||| | | |||||| || |||||| ||||| |
|
|
| T |
1985126 |
gctgatgatgtgttgatattgatgtgtataaggttgtttaaagagatttcaccctttaagatgtttgaa |
1985058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 5625098 - 5625207
Alignment:
| Q |
28 |
tcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaatcaaattccattaatgg |
127 |
Q |
| |
|
||||| ||||||||||| |||| |||| || || |||| || |||||||||||| ||||||||||| || |||||||| |||||||| || ||| | |
|
|
| T |
5625098 |
tcaaggatgtcacatttgtttgattatggagggaggaaattaggtcataatgcaatcttgaaagacatagtaatgcttgaaaatcaaatccctttattta |
5625197 |
T |
|
| Q |
128 |
ttttgagaaa |
137 |
Q |
| |
|
|||||||||| |
|
|
| T |
5625198 |
ttttgagaaa |
5625207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University