View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_154 (Length: 252)

Name: NF1172_low_154
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_154
NF1172_low_154
[»] chr3 (19 HSPs)
chr3 (11-252)||(54451201-54451442)
chr3 (47-149)||(39336290-39336392)
chr3 (19-151)||(47964551-47964683)
chr3 (19-151)||(12114595-12114727)
chr3 (39-138)||(25317164-25317263)
chr3 (47-151)||(33809069-33809173)
chr3 (45-151)||(43346850-43346956)
chr3 (45-148)||(1634373-1634477)
chr3 (48-152)||(46546387-46546491)
chr3 (22-112)||(2417349-2417439)
chr3 (45-151)||(21832402-21832508)
chr3 (45-151)||(29644961-29645067)
chr3 (45-151)||(32589697-32589802)
chr3 (48-110)||(42909758-42909820)
chr3 (94-151)||(2299969-2300026)
chr3 (34-151)||(35946515-35946632)
chr3 (107-151)||(12747873-12747917)
chr3 (93-153)||(33175771-33175831)
chr3 (79-151)||(47965008-47965080)
[»] chr2 (24 HSPs)
chr2 (21-152)||(33561486-33561617)
chr2 (45-151)||(30323457-30323563)
chr2 (45-151)||(33953830-33953936)
chr2 (45-152)||(962590-962697)
chr2 (48-151)||(29873599-29873702)
chr2 (47-138)||(29874084-29874175)
chr2 (45-151)||(28254296-28254402)
chr2 (39-138)||(30312795-30312894)
chr2 (24-151)||(28531352-28531479)
chr2 (36-151)||(38796670-38796785)
chr2 (19-151)||(30313171-30313302)
chr2 (91-151)||(33954366-33954426)
chr2 (39-105)||(2803219-2803285)
chr2 (48-151)||(41678430-41678534)
chr2 (45-138)||(5543057-5543150)
chr2 (45-149)||(35580783-35580886)
chr2 (34-133)||(40163420-40163520)
chr2 (45-151)||(42514642-42514748)
chr2 (105-151)||(43443101-43443147)
chr2 (67-112)||(2323648-2323693)
chr2 (116-153)||(16590879-16590916)
chr2 (45-138)||(36178664-36178757)
chr2 (34-90)||(33731702-33731758)
chr2 (107-151)||(40679750-40679794)
[»] chr6 (15 HSPs)
chr6 (47-151)||(6071125-6071229)
chr6 (19-151)||(12092515-12092647)
chr6 (45-151)||(8481920-8482025)
chr6 (22-151)||(10074399-10074528)
chr6 (22-151)||(10073652-10073779)
chr6 (45-138)||(3409265-3409358)
chr6 (19-139)||(9062383-9062502)
chr6 (87-151)||(33605647-33605711)
chr6 (25-151)||(10074030-10074156)
chr6 (45-151)||(16454900-16455006)
chr6 (87-148)||(33605971-33606032)
chr6 (87-138)||(12071792-12071843)
chr6 (34-111)||(5034869-5034946)
chr6 (34-74)||(2579540-2579580)
chr6 (48-155)||(10911554-10911662)
[»] chr8 (21 HSPs)
chr8 (45-151)||(4154340-4154445)
chr8 (45-151)||(4154725-4154831)
chr8 (45-151)||(8918823-8918929)
chr8 (49-152)||(9620739-9620842)
chr8 (87-152)||(20995502-20995567)
chr8 (67-156)||(41972146-41972235)
chr8 (217-252)||(15343798-15343833)
chr8 (217-252)||(15432863-15432898)
chr8 (217-252)||(15524167-15524202)
chr8 (45-151)||(9608738-9608844)
chr8 (45-138)||(3669693-3669786)
chr8 (59-112)||(34219206-34219259)
chr8 (45-138)||(40518588-40518681)
chr8 (45-151)||(6876921-6877028)
chr8 (45-151)||(3038349-3038455)
chr8 (47-113)||(4715307-4715373)
chr8 (48-138)||(43274841-43274931)
chr8 (19-149)||(45122090-45122220)
chr8 (45-102)||(45122666-45122723)
chr8 (43-151)||(8794104-8794212)
chr8 (45-137)||(34835216-34835308)
[»] chr5 (15 HSPs)
chr5 (19-138)||(36522270-36522389)
chr5 (49-151)||(31509616-31509718)
chr5 (45-151)||(36521955-36522061)
chr5 (49-151)||(36568630-36568732)
chr5 (45-151)||(12662711-12662817)
chr5 (45-138)||(18603179-18603272)
chr5 (45-138)||(41170640-41170733)
chr5 (19-151)||(1028550-1028682)
chr5 (48-151)||(299482-299585)
chr5 (19-138)||(623824-623943)
chr5 (45-144)||(9498713-9498812)
chr5 (45-151)||(34753084-34753190)
chr5 (55-104)||(10351242-10351291)
chr5 (102-151)||(36527199-36527248)
chr5 (107-151)||(24489325-24489369)
[»] chr1 (30 HSPs)
chr1 (21-151)||(1188623-1188753)
chr1 (48-153)||(24600376-24600481)
chr1 (19-151)||(50556444-50556576)
chr1 (19-138)||(32594749-32594868)
chr1 (45-151)||(66531-66637)
chr1 (47-151)||(19283516-19283620)
chr1 (67-151)||(22793271-22793355)
chr1 (47-151)||(24448270-24448374)
chr1 (19-151)||(26661555-26661687)
chr1 (47-151)||(39066261-39066365)
chr1 (34-138)||(44290506-44290610)
chr1 (45-151)||(5320024-5320130)
chr1 (45-151)||(17294570-17294676)
chr1 (21-151)||(22077530-22077660)
chr1 (39-100)||(11400660-11400721)
chr1 (45-138)||(50052082-50052175)
chr1 (19-151)||(5996905-5997036)
chr1 (50-153)||(24132049-24132152)
chr1 (45-151)||(26661957-26662063)
chr1 (45-103)||(30576642-30576700)
chr1 (45-151)||(34364918-34365024)
chr1 (79-152)||(4878795-4878868)
chr1 (114-151)||(35154167-35154204)
chr1 (114-151)||(41157368-41157405)
chr1 (50-151)||(41184489-41184590)
chr1 (45-138)||(44290884-44290977)
chr1 (93-138)||(47379892-47379937)
chr1 (44-112)||(12772904-12772972)
chr1 (107-151)||(22077243-22077287)
chr1 (19-151)||(37850633-37850765)
[»] chr4 (21 HSPs)
chr4 (45-151)||(3244508-3244614)
chr4 (21-151)||(28034222-28034352)
chr4 (67-150)||(15841063-15841146)
chr4 (45-151)||(1731704-1731810)
chr4 (47-138)||(760195-760286)
chr4 (19-130)||(15841399-15841510)
chr4 (45-151)||(25483329-25483435)
chr4 (70-151)||(11348410-11348491)
chr4 (46-151)||(52884688-52884793)
chr4 (46-151)||(52884880-52884985)
chr4 (45-151)||(36629230-36629336)
chr4 (45-151)||(39792917-39793023)
chr4 (45-111)||(41603248-41603314)
chr4 (17-112)||(34544138-34544234)
chr4 (47-151)||(54741237-54741341)
chr4 (49-147)||(54017656-54017754)
chr4 (45-138)||(16888873-16888966)
chr4 (46-151)||(39404391-39404496)
chr4 (39-91)||(2891873-2891925)
chr4 (45-138)||(49302910-49303005)
chr4 (19-151)||(50002419-50002551)
[»] chr7 (16 HSPs)
chr7 (36-151)||(43241488-43241603)
chr7 (45-151)||(1085675-1085781)
chr7 (18-151)||(34218066-34218199)
chr7 (19-151)||(7517573-7517705)
chr7 (19-151)||(7554018-7554150)
chr7 (45-151)||(23436-23542)
chr7 (45-151)||(118360-118466)
chr7 (19-149)||(36622955-36623085)
chr7 (48-151)||(37345909-37346014)
chr7 (45-151)||(45434629-45434735)
chr7 (21-151)||(4124123-4124253)
chr7 (93-151)||(8128548-8128606)
chr7 (45-151)||(30245070-30245176)
chr7 (45-102)||(9901686-9901742)
chr7 (82-147)||(10341829-10341894)
chr7 (114-151)||(30245487-30245524)
[»] scaffold0113 (1 HSPs)
scaffold0113 (62-151)||(39831-39920)
[»] scaffold0078 (1 HSPs)
scaffold0078 (47-151)||(5350-5454)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 54451201 - 54451442
Alignment:
Q  11 cacagagtacaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccattttt 110  Q
    |||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  54451201 cacaaagtacaaatgagagagtaaccttcctttcacccaaaaccttaagacaataagtatatggatcatctcactcataaagtgttcaacctccattttt 54451300  T
Q  111 ctttctgatgtgggacatataactcacatatgcacacaacataaaacagatacattaactacaaataccaaaaagataatatttttgtttatatttcatt 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  54451301 ctttttgatgtgggacatataactcacatatgcacacaacataaaacagatacattaactacaaataccaagaagatagtatttttgtttatatttcatt 54451400  T
Q  211 tcatacgtggtggcttaatcatttaacttgtttgagaatcat 252  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  54451401 tcatacgtggtgccttaatcatttagcttgtttgagaatcat 54451442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 39336290 - 39336392
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcaca 146  Q
    ||||||||||||  |||| |||||||||||| ||||||| ||||| |||||||||||||  ||||| || ||||||||||||||||||||||  ||||||    
T  39336290 ccaaaaccttaaagcaatgagtttatggatcctctcacttataaagtgttcaacctccaactttctatccgatgtgggacatataactcacacttgcaca 39336389  T
Q  147 caa 149  Q
    |||    
T  39336390 caa 39336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 47964551 - 47964683
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||||||   ||| ||| | ||||||||||||||| ||||| |||||||| || ||||||| ||| |  ||||||||||||  ||||| || ||    
T  47964551 acaagtgagagagacgccacactcttacccaaaaccttaaggcaataggtttatgggtcctctcacttatatagcgttcaacctccacatttctatccga 47964650  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    || |||||||| ||||||||  |||||||||||    
T  47964651 tgcgggacatacaactcacacttgcacacaaca 47964683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 12114595 - 12114727
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||| ||||||  |||| ||| | ||||||||||||||||||||  |||||||| || ||| ||| ||||  ||||||||||  | |||||| || ||    
T  12114595 acaagtaagagagacaccacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataaggtgttcaacctttacttttctatccga 12114694  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||| |||||||| |||  |||||||||||    
T  12114695 tgtgggatatataacttacacttgcacacaaca 12114727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 25317263 - 25317164
Alignment:
Q  39 actttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||| ||||||||||||||| ||| |||||||||| || ||||| | | ||| || |||||||||| |||||  |||| ||||||||| ||||||||||    
T  25317263 acttttacccaaaaccttaaggcaacaagtttatgggtcctctcagttacaaagtgctcaacctccacttttccatctggtgtgggacacataactcaca 25317164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 33809069 - 33809173
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcaca 146  Q
    |||||||||||||||||  |||||||   |  ||| ||||||||| |||||||  | || |||||| ||||||||||||||||||||| |||  ||||||    
T  33809069 ccaaaaccttaagacaacgagtttattagttttcttactcataaagtgttcaatatgcaattttctatctgatgtgggacatataacttacacttgcaca 33809168  T
Q  147 caaca 151  Q
    |||||    
T  33809169 caaca 33809173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 43346850 - 43346956
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| |||| ||||||||| |  ||| ||| ||||  ||||||||||  | | || | |||||||||||||||||||||||||  || |    
T  43346850 acccaaaaccttaaggcaatgagtttatgggttctcttacttataaggtgttcaacctttactattttatctgatgtgggacatataactcacacttgta 43346949  T
Q  145 cacaaca 151  Q
    |||||||    
T  43346950 cacaaca 43346956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 1634373 - 1634477
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctcc-atttttctttctgatgtgggacatataactcacatatgc 143  Q
    ||||||||||||||| ||||  |||||||| || ||| ||| ||||  |||| |||||   |||||||| || ||||||||||||||||||||||  |||    
T  1634373 acccaaaaccttaagccaatgggtttatgggtcctcttacttataatgtgtttaaccttttatttttctatccgatgtgggacatataactcacacttgc 1634472  T
Q  144 acaca 148  Q
    |||||    
T  1634473 acaca 1634477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 46546387 - 46546491
Alignment:
Q  48 caaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacac 147  Q
    |||||||||||| ||||  ||||||||||  ||| ||| ||||| |||||||||||||  ||||  ||  |||| ||||||||||||||||  | |||||    
T  46546387 caaaaccttaaggcaatgggtttatggattctctaacttataaagtgttcaacctccacatttcaatccaatgtaggacatataactcacacttacacac 46546486  T
Q  148 aacat 152  Q
    |||||    
T  46546487 aacat 46546491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 2417439 - 2417349
Alignment:
Q  22 agtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttct 112  Q
    |||||||||| |||||  |||| | ||||||||||||  || | ||||||| |||  ||||||| ||||||||||||| ||||| ||||||    
T  2417439 agtgagagagaaaccacgctttaatccaaaaccttaaagcattgagtttatagattctctcacttataaaatgttcaatctccacttttct 2417349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 21832402 - 21832508
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| | || ||||||||  || ||| ||| ||||  ||||||||||  | |||||| ||  |||||||||||||||||||||  ||||    
T  21832402 acccaaaaccttaaggctatgagtttatgagtcctcttacttataaggtgttcaacctttacttttctatccaatgtgggacatataactcacacttgca 21832501  T
Q  145 cacaaca 151  Q
    || ||||    
T  21832502 cataaca 21832508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 29644961 - 29645067
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||||||||  |||||||| || ||| ||| ||||  |||| |||||  | | || | || |||||||||||||||||| |||  ||||    
T  29644961 acccaaaaccttaagacaatgggtttatgggtcctcttacttataaggtgtttaacctttactcttttatccgatgtgggacatataacttacacttgca 29645060  T
Q  145 cacaaca 151  Q
    |||||||    
T  29645061 cacaaca 29645067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 32589802 - 32589697
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  |||||||| || ||| ||| ||||  ||||||||||  ||| || | ||| ||||||||||||| |||||||  ||||    
T  32589802 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttattattttatcttatgtgggacatat-actcacacttgca 32589704  T
Q  145 cacaaca 151  Q
    |||||||    
T  32589703 cacaaca 32589697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 42909820 - 42909758
Alignment:
Q  48 caaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccattttt 110  Q
    ||||| ||||||||||| |||||||||||| ||| ||  |||||| ||||| |||||||||||    
T  42909820 caaaatcttaagacaatgagtttatggatcctctaacctataaaacgttcagcctccattttt 42909758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 2300026 - 2299969
Alignment:
Q  94 gttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||| ||||||| |||||| ||||| |||||||||||||| ||||  |||||||||||    
T  2300026 gttctacctccacttttctatctgacgtgggacatataacccacacttgcacacaaca 2299969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 35946632 - 35946515
Alignment:
Q  34 accatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataac 133  Q
    |||| ||||| ||||||||||||||| |||   |||||||| || ||| ||| ||||  ||||||||||  | | || | || |||||||||||||||||    
T  35946632 accacacttttacccaaaaccttaaggcaacgggtttatgggtcctcttacttataaggtgttcaacctttactgttttatccgatgtgggacatataac 35946533  T
Q  134 tcacatatgcacacaaca 151  Q
    |||||  || ||||||||    
T  35946532 tcacacttgtacacaaca 35946515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 12747873 - 12747917
Alignment:
Q  107 ttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||| || ||||||||||||||||||||||  |||||||||||    
T  12747873 ttttctatccgatgtgggacatataactcacacttgcacacaaca 12747917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 33175771 - 33175831
Alignment:
Q  93 tgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaacata 153  Q
    ||||||||||  | |||||| ||||||||| |||||||||||||||  || ||||||||||    
T  33175771 tgttcaacctttacttttctatctgatgtgagacatataactcacacttgtacacaacata 33175831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 47965008 - 47965080
Alignment:
Q  79 tctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||| ||| |||||| |||||||| |||||| || |||||   ||||||||||||||  |||||||||||    
T  47965008 tctcacttatataatgtttaacctccacttttctatccgatgtaaaacatataactcacacttgcacacaaca 47965080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 33561486 - 33561617
Alignment:
Q  21 aagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatg 120  Q
    |||||||||||  | || ||| | |||||||||||||||||||| ||||||||| || ||||||| ||||| |||| |||||||| |||||| |||||||    
T  33561486 aagtgagagagatatcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccacttttctatctgatg 33561585  T
Q  121 tgggacatataactcacatatgcacacaacat 152  Q
    ||| ||||||||||||||  ||||||||||||    
T  33561586 tggaacatataactcacacttgcacacaacat 33561617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 30323563 - 30323457
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| |||| ||||||| | || |||||||  |||| ||||||||||||| |||||| |||||| ||||||||||||| ||||  ||||    
T  30323563 acccaaaaccttaaggcaatgagtttataggtcctctcacttctaaagtgttcaacctccaattttctatctgatttgggacatataacacacacttgca 30323464  T
Q  145 cacaaca 151  Q
    |||||||    
T  30323463 cacaaca 30323457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 33953830 - 33953936
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||  ||||| ||| | |||||||| || ||||||| ||| | ||||||||||||| |||||| ||||||||||||| |||||||||||| ||||    
T  33953830 acccaaaattttaaggcaacaggtttatgggtcctctcacttatatagtgttcaacctccacttttctatctgatgtgggacttataactcacatttgca 33953929  T
Q  145 cacaaca 151  Q
    |||||||    
T  33953930 cacaaca 33953936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 962697 - 962590
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||||||||  |||||||| || ||||||| ||||  ||||||||||  | |||||| || ||||||||||||||||||||||  ||||    
T  962697 acccaaaaccttaagacaatgggtttatgggtcctctcacttataaggtgttcaacctttacttttctatccgatgtgggacatataactcacacttgca 962598  T
Q  145 cacaacat 152  Q
     |||||||    
T  962597 tacaacat 962590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 29873599 - 29873702
Alignment:
Q  48 caaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacac 147  Q
    |||||||||||| |||| ||||||||  || || |||| ||||||||||||||||||| |||||| ||||||||||||||| |||| |||   |||||||    
T  29873599 caaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctccacttttctatctgatgtgggacatgtaacacacccttgcacac 29873698  T
Q  148 aaca 151  Q
    ||||    
T  29873699 aaca 29873702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 29874084 - 29874175
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||| ||||  |||||||| || || || | ||||| ||||||||||||| |||||| |||||||||||||||||||| ||||    
T  29874084 ccaaaaccttaaggcaatgggtttatgggtcctcccaattataaagtgttcaacctccacttttctatctgatgtgggacatataacacaca 29874175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 28254296 - 28254402
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| |||| ||||||||| || ||| ||| |||| |||||||||||  | |||||| || |||||||||||||||| |||||   |||    
T  28254296 acccaaaaccttaaggcaatgagtttatgggtcctcttacttataagatgttcaacctttacttttctatccgatgtgggacatataagtcacactggca 28254395  T
Q  145 cacaaca 151  Q
    |||||||    
T  28254396 cacaaca 28254402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 30312894 - 30312795
Alignment:
Q  39 actttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctcca-tttttctttctgatgtgggacatataactcac 137  Q
    ||||| |||||||||||||||  ||||||||||||| |||||| | | ||||| ||||||||||||| ||||||| | ||||||||| |||||||| |||    
T  30312894 acttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactttttctat-tgatgtggggcatataacacac 30312796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 28531352 - 28531479
Alignment:
Q  24 tgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgg 123  Q
    ||||||||| |||| ||| | |||||||| |||||| |||| |||||||||  | ||| ||| ||||  ||||||||||    |||||| || |||||||    
T  28531352 tgagagagtcaccacactcttacccaaaatcttaaggcaatgagtttatgggacctcttacttataaggtgttcaacctttgcttttctatccgatgtgg 28531451  T
Q  124 gacatataactcacatatgcacacaaca 151  Q
    |||||||||||||||  |||||||||||    
T  28531452 gacatataactcacacttgcacacaaca 28531479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 38796670 - 38796785
Alignment:
Q  36 catactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactc 135  Q
    |||||| | ||||||||||||||| || || |||||||| || ||| ||| ||||  ||||||||||  ||| || | || |||||||||||||||||||    
T  38796670 catactcttacccaaaaccttaaggcattaggtttatgggtcctcttacttataaggtgttcaacctttattgttttatcagatgtgggacatataactc 38796769  T
Q  136 acatatgcacacaaca 151  Q
    |||  |||||||||||    
T  38796770 acacttgcacacaaca 38796785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 30313302 - 30313171
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||||||   ||| ||| | |||||||| |||||| |||| ||||| ||| || ||||||| ||||  ||||||||||||| |||||| || ||    
T  30313302 acaagtgagagagacgccacactcttacccaaaatcttaaggcaatgagtttttgggtcctctcacttataag-tgttcaacctccacttttctatccga 30313204  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    |||| |||||||||| |||   |||||||||||    
T  30313203 tgtgagacatataacacacgcttgcacacaaca 30313171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 33954366 - 33954426
Alignment:
Q  91 aatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||| |||||| | |||||| |||||||||||||||||||||||||  |||||||||||    
T  33954366 aatgtttaacctcaacttttctatctgatgtgggacatataactcacacttgcacacaaca 33954426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 2803219 - 2803285
Alignment:
Q  39 actttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctcca 105  Q
    ||||| ||||||||| |||||||| ||||||||||| |||||||  | ||| |||||||||||||||    
T  2803219 acttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctcca 2803285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 41678430 - 41678534
Alignment:
Q  48 caaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatat--aactcacatatgcac 145  Q
    |||||||||||| ||| | |||||||| || ||||||| ||||| |||| |||||||  |||||| ||||||||| |||||||  ||||||||  |||||    
T  41678430 caaaaccttaaggcaa-aggtttatgggtcctctcacttataaagtgtttaacctccccttttctatctgatgtgagacatatataactcacacttgcac 41678528  T
Q  146 acaaca 151  Q
    ||||||    
T  41678529 acaaca 41678534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 5543057 - 5543150
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    |||||||| |||||| ||||| ||||||||||| ||| ||| ||||  ||||||||||  | | || | || ||||||||||||||||||||||    
T  5543057 acccaaaatcttaaggcaataggtttatggatcctcttacttataaggtgttcaacctttactattttatcggatgtgggacatataactcaca 5543150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 35580783 - 35580886
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  |||||||| || ||||||| ||||  |||||||| |  ||| || | || ||||||||||||||||||||||  ||||    
T  35580783 acccaaaaccttaaggcaatgggtttatgg-tcctctcacttataaggtgttcaacatttattgttttatccgatgtgggacatataactcacacttgca 35580881  T
Q  145 cacaa 149  Q
    |||||    
T  35580882 cacaa 35580886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 40163420 - 40163520
Alignment:
Q  34 accatactttcacccaaaaccttaa-gacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataa 132  Q
    |||| ||||| |||||||||||||| |||| || ||| |||| |||||| ||| ||||  ||||||||||  | |||||| || ||||||||||||||||    
T  40163420 accacacttttacccaaaaccttaaagacactaggttaatgggtcatcttacttataaggtgttcaacctttacttttctatccgatgtgggacatataa 40163519  T
Q  133 c 133  Q
    |    
T  40163520 c 40163520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 42514748 - 42514642
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    |||||||| |||||| | ||  |||||||| || ||| ||| ||||  ||||||||||  | |||||| |||||||| ||||||||||||||||  ||||    
T  42514748 acccaaaatcttaaggcgatgggtttatgggtcctcttacttataaggtgttcaacctttacttttctatctgatgtaggacatataactcacacttgca 42514649  T
Q  145 cacaaca 151  Q
     ||||||    
T  42514648 tacaaca 42514642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 43443101 - 43443147
Alignment:
Q  105 atttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||||| ||||||||||||||||||||| |||  |||||||||||    
T  43443101 atttttctatctgatgtgggacatataacttacacttgcacacaaca 43443147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 2323693 - 2323648
Alignment:
Q  67 gtttatggatcatctcactcataaaatgttcaacctccatttttct 112  Q
    ||||||||||| ||||||| ||||| ||| ||||||||||||||||    
T  2323693 gtttatggatcctctcacttataaagtgtccaacctccatttttct 2323648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 16590916 - 16590879
Alignment:
Q  116 tgatgtgggacatataactcacatatgcacacaacata 153  Q
    |||||||||||||||||||||||  |||||||||||||    
T  16590916 tgatgtgggacatataactcacacttgcacacaacata 16590879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 36178664 - 36178757
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||||| ||||  |||||||| || ||| ||| ||||  ||||||||||  | | || | || ||||||||||||||||||||||    
T  36178664 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataactcaca 36178757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 33731758 - 33731702
Alignment:
Q  34 accatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataa 90  Q
    |||||||| | ||||||||||||||| ||||| ||||||||||| ||| ||| ||||    
T  33731758 accatactcttacccaaaaccttaaggcaataggtttatggatcctcttacttataa 33731702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 40679750 - 40679794
Alignment:
Q  107 ttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||| || ||| ||||||||||||||||||| |||||||||||    
T  40679750 ttttctatccgatatgggacatataactcacatttgcacacaaca 40679794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 6071229 - 6071125
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcaca 146  Q
    |||||| |||||| |||| |||||||||||||||||||| ||||| ||||||||||||| |||||| |   |||||||||||||||||||||  ||||||    
T  6071229 ccaaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccacttttctattcaatgtgggacatataactcacacttgcaca 6071130  T
Q  147 caaca 151  Q
    |||||    
T  6071129 caaca 6071125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 12092515 - 12092647
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||||||  |||| | | | || |||||||||||| |||| |||||||||||| ||||||| ||||| || |||||||||| |||||| || ||    
T  12092515 acaagtgagagagacaccacagtcttactcaaaaccttaaggcaatgagtttatggatcctctcacttataaagtgctcaacctccacttttctatccga 12092614  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    |||||||||| |||| |||   |||||||||||    
T  12092615 tgtgggacatctaacacacccttgcacacaaca 12092647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 8482025 - 8481920
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    |||||||| |||||| |||| ||||||||  |||||||| | ||||| ||||||||||||| |||| | |||||||| ||||||||||||||||  ||||    
T  8482025 acccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccacttttatatctgatgt-ggacatataactcacacttgca 8481927  T
Q  145 cacaaca 151  Q
    |||||||    
T  8481926 cacaaca 8481920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 10074399 - 10074528
Alignment:
Q  22 agtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgt 121  Q
    ||||||||||  |||| ||| | ||||||||||||||| |||| ||||||||| || ||| ||| ||||  ||||||||||  | |||||| || |||||    
T  10074399 agtgagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgt 10074498  T
Q  122 gggacatataactcacatatgcacacaaca 151  Q
    ||||| | |||||||||  |||||||||||    
T  10074499 gggacctctaactcacacttgcacacaaca 10074528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 10073652 - 10073779
Alignment:
Q  22 agtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgt 121  Q
    ||||||||||  |||| ||| | |||||||| |||||| |||| |||||||||||| ||| ||| ||||  ||||||||||  | |||||  || |||||    
T  10073652 agtgagagagacaccacactcttacccaaaatcttaagccaatgagtttatggatcctcttacttataaggtgttcaacctttacttttc--tccgatgt 10073749  T
Q  122 gggacatataactcacatatgcacacaaca 151  Q
    ||||||||||||| |||  |||||||||||    
T  10073750 gggacatataactaacacttgcacacaaca 10073779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 3409358 - 3409265
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||||| |||| ||||||||| || ||| ||| ||||  ||||||||||  | | || | |||||||||||||||||||||||||    
T  3409358 acccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatctgatgtgggacatataactcaca 3409265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 9062383 - 9062502
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||| ||||||  |||| ||||| ||||||||| |||||||||| ||||||||  || ||| ||| |||| |||||||||||  | | || | || ||    
T  9062383 acaagtaagagagataccacacttttacccaaaac-ttaagacaatgagtttatgagtcctcttacttataagatgttcaacctttactattttatccga 9062481  T
Q  119 tgtgggacatataactcacat 139  Q
    |||||||||||||||||||||    
T  9062482 tgtgggacatataactcacat 9062502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 33605711 - 33605647
Alignment:
Q  87 ataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    ||||| ||||||||||||| |||||| ||||||||| |||||||| ||||||  |||||||||||    
T  33605711 ataaagtgttcaacctccacttttctatctgatgtgagacatatagctcacacttgcacacaaca 33605647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 10074030 - 10074156
Alignment:
Q  25 gagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtggg 124  Q
    |||||||  |||| ||||| ||||||||||||||| ||||  |||||||| || ||| ||| ||||  |||||||| |  | |||||| || ||||||||    
T  10074030 gagagagacaccacacttttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacgtttacttttctatccgatgtggg 10074129  T
Q  125 acatataactcacatatgcacacaaca 151  Q
    | |||||||||||   |||||||||||    
T  10074130 atatataactcacccttgcacacaaca 10074156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 16455006 - 16454900
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||| |||||||| || | | ||| ||||  ||||||||||  | | || | |||||||||||||| ||||||||||| || |    
T  16455006 acccaaaaccttaaggcaataggtttatgggtcctattacttataaggtgttcaacctttactcttttatctgatgtgggacacataactcacatttgta 16454907  T
Q  145 cacaaca 151  Q
    |||||||    
T  16454906 cacaaca 16454900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 33606032 - 33605971
Alignment:
Q  87 ataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacaca 148  Q
    ||||| ||||||||||||| |||||| |  |||||||||||||||||| |||| ||||||||    
T  33606032 ataaagtgttcaacctccacttttctattcgatgtgggacatataacttacatttgcacaca 33605971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 12071792 - 12071843
Alignment:
Q  87 ataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||| ||||||| |||||||||||| ||||||| | |||||||||||||||    
T  12071792 ataaagtgttcaaactccatttttctatctgatgcgagacatataactcaca 12071843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 5034869 - 5034946
Alignment:
Q  34 accatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttc 111  Q
    |||||| ||| | |||||||||||| ||| | |||| |||| |||||||||| ||||| || |||||||||| |||||    
T  5034869 accatatttttatccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccacttttc 5034946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 2579540 - 2579580
Alignment:
Q  34 accatactttcacccaaaaccttaagacaataagtttatgg 74  Q
    |||||||||| ||||||||||||||| |||| |||||||||    
T  2579540 accatacttttacccaaaaccttaaggcaatgagtttatgg 2579580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 10911662 - 10911554
Alignment:
Q  48 caaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctt-tctgatgtgggacatataactcacatatgcaca 146  Q
    |||||| ||||| |||| ||||||||  || ||| ||| ||||  ||||||||||  | |||| || |||||||| ||||||||||||||||  |||| |    
T  10911662 caaaactttaaggcaatgagtttatgagtcctcttacttataaggtgttcaacctttactttttttatctgatgtaggacatataactcacacttgcata 10911563  T
Q  147 caacataaa 155  Q
    |||||||||    
T  10911562 caacataaa 10911554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 4154340 - 4154445
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||  ||||| |||| ||||||||| || ||||||| ||||| ||||||||||||| |||||| |||||||| ||||||||||||||||| ||||    
T  4154340 acccaaaatattaaggcaatgagtttatgggtc-tctcacttataaagtgttcaacctccacttttctatctgatgtaggacatataactcacatttgca 4154438  T
Q  145 cacaaca 151  Q
    |||||||    
T  4154439 cacaaca 4154445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 4154725 - 4154831
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||  | |||| ||||||||| || | ||||| ||||| ||||||||||||| |||||| || ||||||||||||||||||||||  ||||    
T  4154725 acccaaaaccttggggcaatgagtttatgggtcctttcacttataaagtgttcaacctccacttttctatcagatgtgggacatataactcacacttgca 4154824  T
Q  145 cacaaca 151  Q
    |||||||    
T  4154825 cacaaca 4154831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 8918823 - 8918929
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||| |||||||| || ||| ||| ||||| ||||||||||  | | | || ||||||||||||||| |||||||||  ||||    
T  8918823 acccaaaaccttaagtcaataggtttatgggtcctcttacttataaagtgttcaacctttactctgctatctgatgtgggacatgtaactcacacttgca 8918922  T
Q  145 cacaaca 151  Q
    |||||||    
T  8918923 cacaaca 8918929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 9620739 - 9620842
Alignment:
Q  49 aaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacaca 148  Q
    |||| |||||| |||| ||||||||| || ||||||| ||||| || ||||| || | |||||| |||| |||| |||||||||||||||  ||||||||    
T  9620739 aaaatcttaaggcaatgagtttatgggtcctctcacttataaagtgatcaacttctacttttctatctgttgtgagacatataactcacacttgcacaca 9620838  T
Q  149 acat 152  Q
    ||||    
T  9620839 acat 9620842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 20995502 - 20995567
Alignment:
Q  87 ataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaacat 152  Q
    ||||| ||||||||||||| |||| | ||||||||| |||||||||||||||  ||||||||||||    
T  20995502 ataaagtgttcaacctccacttttttatctgatgtgagacatataactcacacttgcacacaacat 20995567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 41972235 - 41972146
Alignment:
Q  67 gtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaacataaaa 156  Q
    |||||||| || | ||||| ||||  ||||||||||  | |||||| || ||||||||||||||||||||||  ||||||||||||||||    
T  41972235 gtttatgggtcctatcacttataaggtgttcaacctttacttttctatccgatgtgggacatataactcacacttgcacacaacataaaa 41972146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 15343798 - 15343833
Alignment:
Q  217 gtggtggcttaatcatttaacttgtttgagaatcat 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  15343798 gtggtggcttaatcatttaacttgtttgagaatcat 15343833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 15432863 - 15432898
Alignment:
Q  217 gtggtggcttaatcatttaacttgtttgagaatcat 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  15432863 gtggtggcttaatcatttaacttgtttgagaatcat 15432898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 15524167 - 15524202
Alignment:
Q  217 gtggtggcttaatcatttaacttgtttgagaatcat 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  15524167 gtggtggcttaatcatttaacttgtttgagaatcat 15524202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 9608844 - 9608738
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    |||||||||||||||   ||  |||||||| |||||| ||| ||||  ||||||||||  | |||||| || ||| ||||||||||||||||||  ||||    
T  9608844 acccaaaaccttaaggtgatgggtttatgggtcatcttacttataaggtgttcaacctttacttttctatccgatatgggacatataactcacacttgca 9608745  T
Q  145 cacaaca 151  Q
    |||||||    
T  9608744 cacaaca 9608738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 3669786 - 3669693
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||||| |||| ||||||||  || ||| ||| ||||  ||||||||||  | | || | |||||||||||||||||||||||||    
T  3669786 acccaaaaccttaaggcaatgagtttatgagtcctcttacttataaggtgttcaacctttactattttatctgatgtgggacatataactcaca 3669693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 34219206 - 34219259
Alignment:
Q  59 gacaataagtttatggatcatctcactcataaaatgttcaacctccatttttct 112  Q
    ||||||||||||||||||| |||| || ||||| ||||||||||||| ||||||    
T  34219206 gacaataagtttatggatcctctctcttataaagtgttcaacctccacttttct 34219259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 40518681 - 40518588
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||||| || |  |||||||| || ||| | | ||||  ||||||||||  | |||||| |||||||||||||||||||||||||    
T  40518681 acccaaaaccttaagtcattgggtttatgggtcctcttatttataaggtgttcaacctttacttttctatctgatgtgggacatataactcaca 40518588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 6876921 - 6877028
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggac-atataactcacatatgc 143  Q
    |||||||||| ||||||||| ||| ||||| |||||| | | ||||  ||||||||||  | |||| | || |||||||||| ||||||||||||  |||    
T  6876921 acccaaaaccctaagacaatgagtgtatgggtcatcttatttataaggtgttcaacctttacttttttatccgatgtgggactatataactcacacttgc 6877020  T
Q  144 acacaaca 151  Q
    ||||||||    
T  6877021 acacaaca 6877028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 3038349 - 3038455
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  |||||||| || | | ||| ||||| ||||||||||  | | || | || ||||||||||||||||||||||  || |    
T  3038349 acccaaaaccttaaggcaatgggtttatgggtccttttacttataaagtgttcaacctttactattttatccgatgtgggacatataactcacacttgta 3038448  T
Q  145 cacaaca 151  Q
    |||||||    
T  3038449 cacaaca 3038455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 4715373 - 4715307
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctt 113  Q
    |||||| ||||||| ||| ||||||| |||| ||||| | ||||| ||||||||||||| |||||||    
T  4715373 ccaaaatcttaagataatgagtttatagatcgtctcatttataaagtgttcaacctccacttttctt 4715307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 43274841 - 43274931
Alignment:
Q  48 caaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    |||||||||||||||||| |||||||| || ||| ||| |||| || ||||||||  | | || | |||||||||  ||||||||||||||    
T  43274841 caaaaccttaagacaataggtttatgggtcctcttacttataatatattcaacctttactcttttatctgatgtgaaacatataactcaca 43274931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 45122090 - 45122220
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||| ||||||  |||| ||| | |||||||||||||||| ||| ||||||||| |  ||| ||| ||||  ||||||||||  | | || | || ||    
T  45122090 acaagtaagagagacaccacactcttacccaaaaccttaagaaaatgagtttatgggttctcttacttataaggtgttcaacctttactattttatccga 45122189  T
Q  119 tgtgggacatataactcacatatgcacacaa 149  Q
    |||| |||||||||||||||  |||||||||    
T  45122190 tgtgagacatataactcacacttgcacacaa 45122220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 45122723 - 45122666
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacct 102  Q
    |||||||||||||||||||| ||||||||| || ||| ||| ||||  ||||||||||    
T  45122723 acccaaaaccttaagacaatgagtttatgggtcctcttacttataaggtgttcaacct 45122666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 8794212 - 8794104
Alignment:
Q  43 tcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatg 142  Q
    |||||||||||||||||| | || |||||||  || ||| ||| |||| ||||||||| |  ||| || | || |||||| |||||||||||||||  ||    
T  8794212 tcacccaaaaccttaagatattaggtttatgagtcctcttacttataagatgttcaacatttattcttttatccgatgtgagacatataactcacacttg 8794113  T
Q  143 cacacaaca 151  Q
     ||||||||    
T  8794112 tacacaaca 8794104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 34835308 - 34835216
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcac 137  Q
    ||||||||| ||||| |||| ||||||||| || ||| ||| ||||  ||||||||||  | | || | || |||||||||||||||||||||    
T  34835308 acccaaaactttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatcggatgtgggacatataactcac 34835216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 36522270 - 36522389
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||||||  |||| ||| | |||||||||||||||| |||  |||||| | || ||||||| |||||||||||||| ||||||||||| ||  |    
T  36522270 acaagtgagagagacaccacactcttacccaaaaccttaagataatgggtttattggtcctctcacttataaaatgttcaacttccatttttctatccaa 36522369  T
Q  119 tgtgggacatataactcaca 138  Q
    |||| |||||||||||||||    
T  36522370 tgtgagacatataactcaca 36522389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 31509718 - 31509616
Alignment:
Q  49 aaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacaca 148  Q
    ||||||| ||| |||| ||||||||  || ||||||| ||||| || |||||||||| |||||| || |||||| |||||||||||||||  ||||||||    
T  31509718 aaaacctcaaggcaatgagtttatgagtcctctcacttataaagtgctcaacctccacttttctatccgatgtgagacatataactcacacttgcacaca 31509619  T
Q  149 aca 151  Q
    |||    
T  31509618 aca 31509616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 36521955 - 36522061
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  |||||||| || ||||| | | | | ||||||||||| | |||||| |||||||||||||||||||||||||  |||     
T  36521955 acccaaaaccttaaggcaattggtttatgggtcctctcatttaaagagtgttcaacctcaacttttctatctgatgtgggacatataactcacacttgcg 36522054  T
Q  145 cacaaca 151  Q
    |||||||    
T  36522055 cacaaca 36522061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 36568630 - 36568732
Alignment:
Q  49 aaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacaca 148  Q
    ||||||||||| ||||  ||||| || |||||||||| ||||  |||||||| |  | |||||| || ||||||||||||||||||||||  ||||||||    
T  36568630 aaaaccttaaggcaatgggtttacgggtcatctcacttataaggtgttcaacttttacttttctatccgatgtgggacatataactcacacttgcacaca 36568729  T
Q  149 aca 151  Q
    |||    
T  36568730 aca 36568732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 12662711 - 12662817
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    |||||||| |||||||||||   ||||||| |  ||| ||| ||||||||||||||||  | | || | || ||||||||||||||||||||||  ||||    
T  12662711 acccaaaaacttaagacaatggatttatgggttttcttacttataaaatgttcaacctttactattttatccgatgtgggacatataactcacacttgca 12662810  T
Q  145 cacaaca 151  Q
    |||||||    
T  12662811 cacaaca 12662817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 18603179 - 18603272
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||||| ||||  |||||||| || ||| ||| ||||  ||||||||||  | | || | |||||||||||||||||||||||||    
T  18603179 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatctgatgtgggacatataactcaca 18603272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 41170733 - 41170640
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||||| ||||  |||||||| || ||| ||| |||| |||||||||||  | | || | || ||||||||||||||||||||||    
T  41170733 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataagatgttcaacctttactattttatccgatgtgggacatataactcaca 41170640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 1028550 - 1028682
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||||||   ||| ||| | ||| |||||||||||   ||| |||||||| || ||| ||| ||||| |||||| |||  | |||||| || ||    
T  1028550 acaagtgagagagacgccacactcttaccaaaaaccttaaggttataggtttatgggtcctcttacttataaagtgttcatcctttacttttctatccga 1028649  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||||||||||||||||  || ||||||||    
T  1028650 tgtgggacatataactcacacttgtacacaaca 1028682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 299585 - 299482
Alignment:
Q  48 caaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacac 147  Q
    |||||||||||| | || ||||||||| |||||| ||| ||||  ||||||||||  | | || | || ||||||||||||||||||||||  ||| |||    
T  299585 caaaaccttaaggctatgagtttatgggtcatcttacttataaggtgttcaacctttactgttttatccgatgtgggacatataactcacacttgcgcac 299486  T
Q  148 aaca 151  Q
    ||||    
T  299485 aaca 299482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 623943 - 623824
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||||||  |||| ||| | || |||||||||||| | |||||||||||| ||| || |||  |||| ||||||||||  | | || | || ||    
T  623943 acaagtgagagagacaccacactcttactcaaaaccttaaggctataagtttatggctcaacttacttgtaaagtgttcaacctttactattatatccga 623844  T
Q  119 tgtgggacatataactcaca 138  Q
    |||| |||||||||||||||    
T  623843 tgtgagacatataactcaca 623824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 9498713 - 9498812
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    |||||||| |||||| ||||  |||||||| || ||| ||| ||||  ||||||||||  | | |||| ||||||||| |||||||||||||||| ||||    
T  9498713 acccaaaatcttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattctatctgatgtgagacatataactcacatttgca 9498812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 34753084 - 34753190
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  |||||||| || ||| ||| ||||  |||||||| |  | |||||| ||  ||||||||||||||||| |||| || |    
T  34753084 acccaaaaccttaaggcaatcggtttatgggtcttcttacttataaggtgttcaacttttacttttctatccaatgtgggacatataacttacatttgta 34753183  T
Q  145 cacaaca 151  Q
    |||||||    
T  34753184 cacaaca 34753190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 10351242 - 10351291
Alignment:
Q  55 ttaagacaataagtttatggatcatctcactcataaaatgttcaacctcc 104  Q
    |||||||||| ||||||||| |||| ||||  ||||||||||||||||||    
T  10351242 ttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctcc 10351291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 36527199 - 36527248
Alignment:
Q  102 tccatttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||| |||||| |||||||||||||||||||||||||  || ||||||||    
T  36527199 tccacttttctatctgatgtgggacatataactcacacttgtacacaaca 36527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 24489325 - 24489369
Alignment:
Q  107 ttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||| |||||||||||||||||||||||||  || ||||||||    
T  24489325 ttttctatctgatgtgggacatataactcacacttgaacacaaca 24489369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 1188623 - 1188753
Alignment:
Q  21 aagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatg 120  Q
    |||||||||||   ||| ||||| ||||||||||||||  |||| ||||||||  || ||||||| ||||||| ||||||||||| |||||| || |||     
T  1188623 aagtgagagagacgccacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccacttttctatccgata 1188722  T
Q  121 tgggacatataactcacatatgcacacaaca 151  Q
    ||| ||||||||||||||  |||||||||||    
T  1188723 tggaacatataactcacacttgcacacaaca 1188753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 24600376 - 24600481
Alignment:
Q  48 caaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacac 147  Q
    ||||||||||||||||| ||||||||  |  ||| ||| |||| |||||||||||  | |||||| || ||| ||||||||||||||||||  |||||||    
T  24600376 caaaaccttaagacaatgagtttatgagttctcttacttataatatgttcaacctttacttttctatccgatatgggacatataactcacacttgcacac 24600475  T
Q  148 aacata 153  Q
    ||||||    
T  24600476 aacata 24600481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 50556576 - 50556444
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||||||  |||| ||||| |  ||||||||||||| |||| ||||| ||||  ||||||| ||||| ||||||||||||  |||||| | |||    
T  50556576 acaagtgagagagataccaaacttttattcaaaaccttaagaaaataggtttacggattctctcacttataaattgttcaacctccgcttttctatatga 50556477  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    |||| || ||||||| ||||  ||||| |||||    
T  50556476 tgtgtgatatataacccacacttgcacgcaaca 50556444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 32594749 - 32594868
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||| ||||||  |||| ||| | |||||||||||||||||||| ||||||||| || ||| ||| ||||  ||||||||||  | | || | |||||    
T  32594749 acaagtaagagagacaccacactcttacccaaaaccttaagacaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatctga 32594848  T
Q  119 tgtgggacatataactcaca 138  Q
    ||| ||||||||||||||||    
T  32594849 tgtaggacatataactcaca 32594868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 66531 - 66637
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| | ||| ||||||||||| ||| ||| ||||  ||||||||||  | |||||| || ||| ||| ||||||||||||||  ||||    
T  66531 acccaaaaccttaaggccatatgtttatggatcctcttacttataaggtgttcaacctttacttttctatccgatatggaacatataactcacacttgca 66630  T
Q  145 cacaaca 151  Q
    |||||||    
T  66631 cacaaca 66637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 19283516 - 19283620
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcaca 146  Q
    ||||||||||||| | || ||||||||  || ||||| | | ||| || |||||||||| |||||| || | ||||||||||||||||||||  ||||||    
T  19283516 ccaaaaccttaaggcgatgagtttatgtgtcctctcatttacaaagtgctcaacctccacttttctatccggtgtgggacatataactcacacttgcaca 19283615  T
Q  147 caaca 151  Q
    |||||    
T  19283616 caaca 19283620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 22793355 - 22793271
Alignment:
Q  67 gtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||||||| ||||||| ||||| | ||||||||| | |||||| |  ||||||||||||||||||||||  ||| |||||||    
T  22793355 gtttatggatcctctcacttataaagttttcaacctctacttttctatacgatgtgggacatataactcacacttgctcacaaca 22793271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 24448374 - 24448270
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcaca 146  Q
    |||||| ||||||||||| ||||||||   | ||||||| |||||||||||||| |||| ||||||||  |||||   |||||||||| |||  ||||||    
T  24448374 ccaaaatcttaagacaatgagtttatgagccctctcacttataaaatgttcaacttccacttttctttgagatgtctaacatataacttacacttgcaca 24448275  T
Q  147 caaca 151  Q
    |||||    
T  24448274 caaca 24448270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 26661555 - 26661687
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    ||||| |||||||  |||| ||| | ||||||||||||||| |||| ||||||||| || ||||||| ||||  ||||||||||  | | || |  | ||    
T  26661555 acaagcgagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctctcacttataaggtgttcaacctttactcttttacccga 26661654  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||||||||||||||||  || ||||||||    
T  26661655 tgtgggacatataactcacacttgtacacaaca 26661687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 39066261 - 39066365
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcaca 146  Q
    |||||||||||||||||| | ||||||| |||||| | | ||||  ||||||||||  | |||||| || ||||||| | ||||||||||||  ||||||    
T  39066261 ccaaaaccttaagacaatgattttatgggtcatcttagttataaggtgttcaacctttacttttctatccgatgtggaatatataactcacacttgcaca 39066360  T
Q  147 caaca 151  Q
    |||||    
T  39066361 caaca 39066365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 44290506 - 44290610
Alignment:
Q  34 accatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataac 133  Q
    |||||||| | ||||||||||||||| ||||  |||||||| || ||| ||| |||| |||||||||||  | | || | || |||||||||||||||||    
T  44290506 accatactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataagatgttcaacctttactattttatccgatgtgggacatataac 44290605  T
Q  134 tcaca 138  Q
    |||||    
T  44290606 tcaca 44290610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 5320024 - 5320130
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| | || ||||||||| || ||||||| ||||  |||||||| |  | |||||| || ||||||| ||||||||||||||  ||||    
T  5320024 acccaaaaccttaaggctatgagtttatgggtcctctcacttataaggtgttcaacttttacttttctatccgatgtggaacatataactcacacttgca 5320123  T
Q  145 cacaaca 151  Q
     ||||||    
T  5320124 tacaaca 5320130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 17294676 - 17294570
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  |||||||| || ||| ||| ||||| ||||||||||  | | || | || ||||||||||||||||||||||  || |    
T  17294676 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataaagtgttcaacctttactcttttatccgatgtgggacatataactcacacttgta 17294577  T
Q  145 cacaaca 151  Q
    |||||||    
T  17294576 cacaaca 17294570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 22077530 - 22077660
Alignment:
Q  21 aagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatg 120  Q
    |||||||||||   ||| ||| | ||||||||||||||| | |  ||||||||| || ||| ||| ||||  ||||||||||  | |||||| || ||||    
T  22077530 aagtgagagagacgccacactcttacccaaaaccttaaggctacgagtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatg 22077629  T
Q  121 tgggacatataactcacatatgcacacaaca 151  Q
    || |||||||||||||||  |||||||||||    
T  22077630 tgagacatataactcacacttgcacacaaca 22077660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 11400721 - 11400660
Alignment:
Q  39 actttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaac 100  Q
    ||||| || ||||||||||||||| |||||||||   |||||||||| ||||||||||||||    
T  11400721 actttaactcaaaaccttaagacattaagtttatatgtcatctcacttataaaatgttcaac 11400660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 50052082 - 50052175
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||| |||||| |||| |||||||| || ||| ||| |||| |||||||||||  | | || | || ||||||||||||||||||||||    
T  50052082 acccaaaactttaagaaaataggtttatgggtcctcttacttataagatgttcaacctttactattttatccgatgtgggacatataactcaca 50052175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 5996905 - 5997036
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||| ||||||||  |||| ||| |||| ||||||||||| |||||   | |||||||| ||||| | ||||||||||||| | ||| ||||||  || |    
T  5996905 acaaatgagagagacaccacactctcactcaaaaccttaa-acaatggatatatggatcctctcatttataaaatgttcaagcaccacttttctaactta 5997003  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||||||||||| |||   |||||||||||    
T  5997004 tgtgggacatataacccacgcttgcacacaaca 5997036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 24132049 - 24132152
Alignment:
Q  50 aaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaa 149  Q
    |||||||||| |||| ||||||||||||  || | | ||||  ||||||||||  | |||||| || |||| |||||||||||||||||  |||| ||||    
T  24132049 aaaccttaaggcaatgagtttatggatccccttatttataaggtgttcaacctttacttttctatccgatgagggacatataactcacagttgcatacaa 24132148  T
Q  150 cata 153  Q
    ||||    
T  24132149 cata 24132152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 26661957 - 26662063
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  |||||||| || ||||||| ||||  ||||||||||  | | || | |||||| ||||| ||||||||||||  || |    
T  26661957 acccaaaaccttaaggcaatcggtttatgggtcttctcacttataaggtgttcaacctttactcttttatctgatatgggatatataactcacacttgta 26662056  T
Q  145 cacaaca 151  Q
    |||||||    
T  26662057 cacaaca 26662063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 30576642 - 30576700
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctc 103  Q
    ||||||||| |||||||| || || ||||| || ||||||||||||| |||||||||||    
T  30576642 acccaaaacattaagacattatgtctatgggtcctctcactcataaagtgttcaacctc 30576700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 34365024 - 34364918
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| | ||  |||||||| || ||| ||| ||||  ||||||||||  ||| || | || |||||| |||||||||||||||  ||||    
T  34365024 acccaaaaccttaaggctatgggtttatgggtcctcttacttataaggtgttcaacctttattattttatccgatgtgtgacatataactcacacttgca 34364925  T
Q  145 cacaaca 151  Q
    |||||||    
T  34364924 cacaaca 34364918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 4878868 - 4878795
Alignment:
Q  79 tctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaacat 152  Q
    ||||||| ||||||||||||| || || | || | || ||||||| ||||||||||||||  ||||||||||||    
T  4878868 tctcacttataaaatgttcaagcttcactattttatccgatgtggaacatataactcacaattgcacacaacat 4878795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 35154167 - 35154204
Alignment:
Q  114 tctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||||||||||||||||||||||  |||||||||||    
T  35154167 tctgatgtgggacatataactcacacttgcacacaaca 35154204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 41157405 - 41157368
Alignment:
Q  114 tctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||||||||||||||||||||||  |||||||||||    
T  41157405 tctgatgtgggacatataactcacacttgcacacaaca 41157368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 41184489 - 41184590
Alignment:
Q  50 aaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaa 149  Q
    |||||||||| ||||  |||||||| || ||| ||| ||||| ||||||||||  | | || | || |||||| |||||||||||||||  |||||||||    
T  41184489 aaaccttaaggcaatgggtttatgggtcctcttacttataaagtgttcaacctttactattttatccgatgtgagacatataactcacacttgcacacaa 41184588  T
Q  150 ca 151  Q
    ||    
T  41184589 ca 41184590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 44290884 - 44290977
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||||| ||||  |||||||| || ||| ||| ||||  ||||||||||  | | || | || ||||||||||||||||||||||    
T  44290884 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataactcaca 44290977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 47379892 - 47379937
Alignment:
Q  93 tgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||| |||||| || ||||||||| ||||||||||||    
T  47379892 tgttcaacctccacttttctatccgatgtgggatatataactcaca 47379937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 12772972 - 12772904
Alignment:
Q  44 cacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttct 112  Q
    |||| |||||||||||||||| | |||||||||  ||||||| |||||  |||||||||| | ||||||    
T  12772972 cacctaaaaccttaagacaatgaatttatggattctctcacttataaagcgttcaacctcaagttttct 12772904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 22077243 - 22077287
Alignment:
Q  107 ttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||| || ||||||||||||||||||||||  |||||||||||    
T  22077243 ttttctatccgatgtgggacatataactcacacttgcacacaaca 22077287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 37850633 - 37850765
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||||||  |||| ||| | | || ||||||||| ||| || |||||||| |  ||| ||| ||||  ||||||||||| | | || | |  ||    
T  37850633 acaagtgagagagacaccacactcttatccgaaaccttaaaacattaggtttatgggttctcttacttataaggtgttcaacctctactgttttatgcga 37850732  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||||||||||||||||  |||||||||||    
T  37850733 tgtgggacatataactcacacttgcacacaaca 37850765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 3244508 - 3244614
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||| |||||||||| ||||||||| || ||| ||| |||| |||||||||||  | |||||| || |||||| |||||||||||||||  ||||    
T  3244508 acccaaaactttaagacaatgagtttatgggtcctcttacttataagatgttcaacctttacttttctatccgatgtgagacatataactcacacttgca 3244607  T
Q  145 cacaaca 151  Q
    |||||||    
T  3244608 cacaaca 3244614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 28034352 - 28034222
Alignment:
Q  21 aagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatg 120  Q
    |||||||||||   ||| ||| | ||| ||||||||||  |||||||||||||| |  ||||||| ||||| ||||||||||||| |||||| || ||||    
T  28034352 aagtgagagagacgccacactcttacctaaaaccttaaagcaataagtttatgggttctctcacttataaagtgttcaacctccacttttctatccgatg 28034253  T
Q  121 tgggacatataactcacatatgcacacaaca 151  Q
     ||||||||||| |||||  |||||||||||    
T  28034252 cgggacatataattcacacttgcacacaaca 28034222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 15841063 - 15841146
Alignment:
Q  67 gtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaac 150  Q
    |||||| |||| ||||||| |||||||||||| |||||| |||||| |||||| |||||||||||| |||||| || |||||||    
T  15841063 gtttatagatcctctcacttataaaatgttcagcctccacttttctatctgatatgggacatataattcacatttgtacacaac 15841146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 1731704 - 1731810
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  |||||||| || ||| | | |||| |||||||||||  | | || | |||||||||||||||||||||||||| ||||    
T  1731704 acccaaaaccttaaggcaattggtttatgggtcctcttatttataagatgttcaacctttactgttttatctgatgtgggacatataactcacatttgca 1731803  T
Q  145 cacaaca 151  Q
    |||||||    
T  1731804 cacaaca 1731810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 760286 - 760195
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    |||||| |||||| |||| ||||||||| || ||||||| ||||| |  ||||||| ||||||||| |  ||||||||||||||||||||||    
T  760286 ccaaaatcttaaggcaatgagtttatgggtcctctcacttataaagttctcaaccttcatttttctattcgatgtgggacatataactcaca 760195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 15841399 - 15841510
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||||||  | || ||| | ||||||||||||||| ||||  ||||||| ||| ||||||| | ||| ||||||||||||| |||||| | |||    
T  15841399 acaagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttcaacctccacttttctatttga 15841498  T
Q  119 tgtgggacatat 130  Q
    |||| |||||||    
T  15841499 tgtgagacatat 15841510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 25483435 - 25483329
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  ||||||||||| ||| ||| |||| |||||||||||  | | || | || |||||| |||||||||||||||  ||||    
T  25483435 acccaaaaccttaaggcaatgggtttatggatcctcttacttataagatgttcaacctttactattttatccgatgtgagacatataactcacacttgca 25483336  T
Q  145 cacaaca 151  Q
    |||||||    
T  25483335 cacaaca 25483329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 11348410 - 11348491
Alignment:
Q  70 tatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||||| ||||||| ||||| ||||||||||||| | || | |||||||| | ||||||||||||||  |||||||||||    
T  11348410 tatggatcctctcacttataaagtgttcaacctccactattttatctgatgtagaacatataactcacaattgcacacaaca 11348491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 52884793 - 52884688
Alignment:
Q  46 cccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcac 145  Q
    |||||||||||||| ||||  |||||| |||||||| ||| ||||  ||||||||||  | | || | || ||||||||||||||||||||||  |||||    
T  52884793 cccaaaaccttaaggcaatgggtttatcgatcatcttacttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcac 52884694  T
Q  146 acaaca 151  Q
    ||||||    
T  52884693 acaaca 52884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 52884985 - 52884880
Alignment:
Q  46 cccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcac 145  Q
    |||||||||||||| ||||  ||||||||||| ||| ||| ||||  ||||||||||  | | || | || ||||||||||||||||||||||  |||||    
T  52884985 cccaaaaccttaaggcaatgggtttatggatcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcac 52884886  T
Q  146 acaaca 151  Q
    ||||||    
T  52884885 acaaca 52884880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 36629336 - 36629230
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| |||| ||||||||| || ||| ||| ||||  |||| ||| |  | |||||| || ||||||||||||||||||||||  || |    
T  36629336 acccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgtttaacttttacttttctatccgatgtgggacatataactcacacttgaa 36629237  T
Q  145 cacaaca 151  Q
    |||||||    
T  36629236 cacaaca 36629230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 39792917 - 39793023
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| |||| |||||| || || |||  || ||||  |||||||| |  | |||||| |||||||||||||||||||||||||  || |    
T  39792917 acccaaaaccttaaggcaatgagtttacggttcctctttcttataaggtgttcaacatttacttttctatctgatgtgggacatataactcacacttgta 39793016  T
Q  145 cacaaca 151  Q
    |||||||    
T  39793017 cacaaca 39793023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 41603248 - 41603314
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttc 111  Q
    |||||||||||||||||| || |||||||| || ||||||| ||||| || |||||||||| |||||    
T  41603248 acccaaaaccttaagacactatgtttatgggtcttctcacttataaagtgctcaacctccacttttc 41603314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 34544234 - 34544138
Alignment:
Q  17 gtacaagtgagagagtaaccatactttcacccaaaa-ccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttct 112  Q
    |||||||||||||||  |||| ||| | |||||||| ||||||| |||| ||||||||| || ||||| | ||||| || |||||||||| ||||||    
T  34544234 gtacaagtgagagagataccacactcttacccaaaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccacttttct 34544138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 54741237 - 54741341
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcaca 146  Q
    ||||||||||||||||||  || ||||| || ||| ||| ||||  ||||||||||  | |||||| || |||||| ||||||||| |||||  ||||||    
T  54741237 ccaaaaccttaagacaatctgtgtatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgagacatataattcacacttgcaca 54741336  T
Q  147 caaca 151  Q
    |||||    
T  54741337 caaca 54741341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 54017656 - 54017754
Alignment:
Q  49 aaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacac 147  Q
    ||||||||||| ||||  |||||||| || ||| ||| |||| |||||||||||  | | || | ||||| |||||||||||||||||||  |||||||    
T  54017656 aaaaccttaaggcaatgggtttatgggtcctcttacttataagatgttcaacctttactattttatctgacgtgggacatataactcacacttgcacac 54017754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 16888873 - 16888966
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    |||||||||| ||||||||| ||||||| | |  ||| ||| ||||  | ||||||||  | |||||| || ||||||||||||||||||||||    
T  16888873 acccaaaaccgtaagacaatgagtttataggttctcttacttataaggtattcaacctttacttttctatccgatgtgggacatataactcaca 16888966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 39404496 - 39404391
Alignment:
Q  46 cccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcac 145  Q
    |||||||||||||| | ||| |||||||| || ||| ||| ||||  ||||| ||||  | | || | |||||||||||||||||||||||||  || ||    
T  39404496 cccaaaaccttaaggctataggtttatgggtcctcttacttataaggtgttccacctttactcttttatctgatgtgggacatataactcacacttgtac 39404397  T
Q  146 acaaca 151  Q
    ||||||    
T  39404396 acaaca 39404391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 2891873 - 2891925
Alignment:
Q  39 actttcacccaaaaccttaagacaataagtttatggatcatctcactcataaa 91  Q
    ||||| |||||||||||||||||| || ||||||||||| ||| ||| |||||    
T  2891873 actttaacccaaaaccttaagacattaggtttatggatcctcttacttataaa 2891925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 49303005 - 49302910
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactc--ataaaatgttcaacctccatttttctttctgatgtgggacatataactcaca 138  Q
    ||||||||||||||| ||||  |||||||| || ||| |||   |||| |||||||||||  | |||| | | |||||||||||||||||||||||    
T  49303005 acccaaaaccttaaggcaatgggtttatgggtcctcttacttttataagatgttcaacctttacttttttatttgatgtgggacatataactcaca 49302910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 50002551 - 50002419
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||| ||||||  |||| ||| | ||||||||||||||||||||   ||||||| || ||| ||| | ||| ||||||||||  | | || | || ||    
T  50002551 acaagtaagagagacaccacactcttacccaaaaccttaagacaatggatttatgggtcctcttacttaaaaagtgttcaacctttactcttttatccga 50002452  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    |||| |||||||||||||||  |||| ||||||    
T  50002451 tgtgagacatataactcacacttgcaaacaaca 50002419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 43241603 - 43241488
Alignment:
Q  36 catactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactc 135  Q
    |||||||| ||| ||||||||||| |||||||||||||  || | | ||| ||||  ||||||||||  |||||| | || ||||||| |||||||||||    
T  43241603 catacttttacctaaaaccttaagtcaataagtttatgagtccttttacttataaggtgttcaacctttatttttttatccgatgtggaacatataactc 43241504  T
Q  136 acatatgcacacaaca 151  Q
    |||  |||||||||||    
T  43241503 acacttgcacacaaca 43241488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 1085675 - 1085781
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||  |||||||| || ||| ||| ||||| ||||||||||  | | || | || ||||||||||||||||||||||  ||||    
T  1085675 acccaaaaccttaaggcaatgggtttatgggtcctcttacttataaagtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 1085774  T
Q  145 cacaaca 151  Q
    |||||||    
T  1085775 cacaaca 1085781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 34218066 - 34218199
Alignment:
Q  18 tacaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctg 117  Q
    |||||| |||||||  |||| ||| | ||||||||||||||||||||  |||||||  || ||||||| ||||  |||||||| |  | |||| | || |    
T  34218066 tacaagcgagagagacaccacactcttacccaaaaccttaagacaatgggtttatgagtcctctcacttataaggtgttcaacatttacttttttatccg 34218165  T
Q  118 atgtgggacatataactcacatatgcacacaaca 151  Q
    ||||| |||||||||||||||| || ||||||||    
T  34218166 atgtgagacatataactcacatttgtacacaaca 34218199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 7517705 - 7517573
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||||||| ||  |||| ||| | ||||||||||||||| ||||  |||||||| || ||| ||| ||||  ||||||||||  | | || | || ||    
T  7517705 acaagtgagacagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttatccga 7517606  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||||||||||||||||  |||||||||||    
T  7517605 tgtgggacatataactcacacttgcacacaaca 7517573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 7554150 - 7554018
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    ||||| |||||||  |||| ||| | ||||||||||||||| | ||  ||||||||||| ||| ||| ||||  ||||||||||  | | || | || ||    
T  7554150 acaagcgagagagacaccacactcttacccaaaaccttaaggctatgggtttatggatcctcttacttataaggtgttcaacctttactattttatccga 7554051  T
Q  119 tgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||||||||||||||||  |||||||||||    
T  7554050 tgtgggacatataactcacacttgcacacaaca 7554018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 23436 - 23542
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| ||||| |||||||| || ||| ||| ||||  ||||||||||  | | || | || ||||||| ||||||||||||||  ||||    
T  23436 acccaaaaccttaaggcaataggtttatgggtcctcttacttataaggtgttcaacctttactattgtatccgatgtggaacatataactcacaattgca 23535  T
Q  145 cacaaca 151  Q
    |||||||    
T  23536 cacaaca 23542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 118360 - 118466
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||| |  |||  ||||||||||| ||| ||| || |  ||||||||||  | |||||| ||||||||||||||||||||| |||  ||||    
T  118360 acccaaaaccttacggtaatgggtttatggatcctcttacttattaggtgttcaacctttacttttctatctgatgtgggacatataacttacacttgca 118459  T
Q  145 cacaaca 151  Q
    |||||||    
T  118460 cacaaca 118466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 36623085 - 36622955
Alignment:
Q  19 acaagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctga 118  Q
    |||||| ||||||  ||||||||   ||||||||||||||| ||||   |||||||||| ||  ||| |||||||||| |||||  | | || | || ||    
T  36623085 acaagtaagagaggcaccatactcctacccaaaaccttaaggcaatggatttatggatcctcctacttataaaatgtttaacctttactattttatccga 36622986  T
Q  119 tgtgggacatataactcacatatgcacacaa 149  Q
    ||||||||||||||||||||  |||||||||    
T  36622985 tgtgggacatataactcacacttgcacacaa 36622955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 37346014 - 37345909
Alignment:
Q  48 caaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatata--actcacatatgcac 145  Q
    |||||| ||||| ||||| |||||||| || ||||||| |||||||||| |||||||| |||||| || ||| |  ||||||||  |||||||  |||||    
T  37346014 caaaactttaaggcaatatgtttatgggtcttctcacttataaaatgtttaacctccacttttctatcagatatatgacatatataactcacacttgcac 37345915  T
Q  146 acaaca 151  Q
    ||||||    
T  37345914 acaaca 37345909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 45434735 - 45434629
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| || ||||||||||| || ||| ||| ||||  ||||||||||  | |||| | || |||||||||||||||||| |||  || |    
T  45434735 acccaaaaccttaaggcagtaagtttatgggtcctcttacttataaggtgttcaacctttacttttttatccgatgtgggacatataacttacacttgta 45434636  T
Q  145 cacaaca 151  Q
    |||||||    
T  45434635 cacaaca 45434629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 4124123 - 4124253
Alignment:
Q  21 aagtgagagagtaaccatactttcacccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatg 120  Q
    |||||||||||  |||| ||||| | ||||||||||||  |||| ||||||| | || ||||||| ||||| |||  |||||| | ||||||  | ||||    
T  4124123 aagtgagagagacaccacacttttatccaaaaccttaatgcaatgagtttattggtcctctcacttataaagtgtcaaacctcaaattttctaaccgatg 4124222  T
Q  121 tgggacatataactcacatatgcacacaaca 151  Q
    | |||||| ||| |||||  |||||||||||    
T  4124223 taggacatgtaattcacagttgcacacaaca 4124253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 8128548 - 8128606
Alignment:
Q  93 tgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    ||||||||||  |||||||| || ||| ||||||||||||||||||  |||||||||||    
T  8128548 tgttcaacctttatttttctatccgatatgggacatataactcacacttgcacacaaca 8128606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 30245176 - 30245070
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgca 144  Q
    ||||||||||||||| |||| ||||||||| || ||| ||| ||||  ||||||||||  | | || | || ||||||| ||||||||||||||  || |    
T  30245176 acccaaaaccttaaggcaatgagtttatgggtcgtcttacttataaggtgttcaacctttactcttttatccgatgtggaacatataactcacacttgta 30245077  T
Q  145 cacaaca 151  Q
    |||||||    
T  30245076 cacaaca 30245070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 9901742 - 9901686
Alignment:
Q  45 acccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacct 102  Q
    |||||||||||||||||||| |||||||||||| ||| ||  |||| |||||||||||    
T  9901742 acccaaaaccttaagacaatgagtttatggatcctct-acgtataagatgttcaacct 9901686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 10341894 - 10341829
Alignment:
Q  82 cactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacac 147  Q
    |||| ||||| ||||||||||||| |||||| || |||||| ||||||||||| | || |||||||    
T  10341894 cacttataaagtgttcaacctccacttttctatccgatgtgagacatataacttatatttgcacac 10341829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 30245524 - 30245487
Alignment:
Q  114 tctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||||||||||||||||||||||  |||||||||||    
T  30245524 tctgatgtgggacatataactcacacttgcacacaaca 30245487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 39920 - 39831
Alignment:
Q  62 aataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcacacaaca 151  Q
    |||||||||||   |||||||||| |||||  || ||||| ||| |||||| || ||||||||||||||||||||||  || ||||||||    
T  39920 aataagtttatatctcatctcacttataaagagtccaaccaccacttttctatccgatgtgggacatataactcacacttgaacacaaca 39831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 5454 - 5350
Alignment:
Q  47 ccaaaaccttaagacaataagtttatggatcatctcactcataaaatgttcaacctccatttttctttctgatgtgggacatataactcacatatgcaca 146  Q
    |||||| |||||| ||||  |||||||| || ||| ||| ||||  ||||||||||  | | |||| || ||||||| ||||||||||||||  ||||||    
T  5454 ccaaaatcttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactgttctatccgatgtggaacatataactcacacttgcaca 5355  T
Q  147 caaca 151  Q
    |||||    
T  5354 caaca 5350  T

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