View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_157 (Length: 251)
Name: NF1172_low_157
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_157 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1580856 - 1580634
Alignment:
| Q |
1 |
ttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1580856 |
ttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactc |
1580757 |
T |
|
| Q |
101 |
ttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcctttcattgtgctttgtggaatattaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1580756 |
ttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactgcttctcctttcattgtgctttgtggaatattaag |
1580657 |
T |
|
| Q |
201 |
aggcaattttgtttcttggcgaa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1580656 |
aggcaattttgtttcttggcgaa |
1580634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1603959 - 1604181
Alignment:
| Q |
1 |
ttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1603959 |
ttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactc |
1604058 |
T |
|
| Q |
101 |
ttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcctttcattgtgctttgtggaatattaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1604059 |
ttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactgcttctcctttcattgtgctttgtggaatattaag |
1604158 |
T |
|
| Q |
201 |
aggcaattttgtttcttggcgaa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1604159 |
aggcaattttgtttcttggcgaa |
1604181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 1590881 - 1591048
Alignment:
| Q |
15 |
aataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgcctta |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| || ||| |||||||||||| |||||||||| || ||||||| ||| | | |
|
|
| T |
1590881 |
aataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggtttaacacttctttccgcataa |
1590980 |
T |
|
| Q |
115 |
t-cagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcctttcattgt |
182 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| |
|
|
| T |
1590981 |
aacatgc-tgctaccttcatcacttgagcgacaccttttctttttattcacgacatctccttccattgt |
1591048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 1587342 - 1587191
Alignment:
| Q |
15 |
aataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgcctta |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| || ||| |||||||||||| |||||||||| |||||||||| | | | |
|
|
| T |
1587342 |
aataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggtttaactcttctttccac---a |
1587246 |
T |
|
| Q |
115 |
tcagccatgct---accttcatcacttgagcgacaccttttcttcttattcacta |
166 |
Q |
| |
|
| || |||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1587245 |
taagacatgctgctaccttcatcacttgagcgacaccttttctttttattcacta |
1587191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 1586815 - 1586778
Alignment:
| Q |
209 |
ttgtttcttggcgaacatgatctccttcctttgcttct |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
1586815 |
ttgtttcttggcgaacatgatctccttccattgtttct |
1586778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 1586845 - 1586808
Alignment:
| Q |
209 |
ttgtttcttggcgaacatgatctccttcctttgcttct |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
1586845 |
ttgtttcttggcgaacatgatctccttccgttgtttct |
1586808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 1586959 - 1586922
Alignment:
| Q |
209 |
ttgtttcttggcgaacatgatctccttcctttgcttct |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
1586959 |
ttgtttcttggcgaacatgatctccttccgttgtttct |
1586922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 19270464 - 19270616
Alignment:
| Q |
15 |
aataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgcctta |
114 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
19270464 |
aataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggtttcactcttctttctgcgtga |
19270563 |
T |
|
| Q |
115 |
tcagccatgct---accttcatcacttgagcgacaccttttcttcttattcactac |
167 |
Q |
| |
|
| |||||| ||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
19270564 |
---gacatgcttctaccttcatcacttgagcaacaccttttctttttattcactac |
19270616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 19270870 - 19270907
Alignment:
| Q |
209 |
ttgtttcttggcgaacatgatctccttcctttgcttct |
246 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
19270870 |
ttgtttcttggcgaacatgatctcgttcctttgtttct |
19270907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 39616233 - 39616349
Alignment:
| Q |
75 |
cttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcct |
174 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| || || ||||||| ||||||||| || ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39616233 |
cttcttcgtggtctttggtttcgttcttctttccgc---ataagacatgctaacttcatcacatgggcgacaccttttcttggtattcgctacttctcct |
39616329 |
T |
|
| Q |
175 |
ttcattgtgctttgtggaat |
194 |
Q |
| |
|
| || |||| |||||||||| |
|
|
| T |
39616330 |
tccactgtgttttgtggaat |
39616349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University