View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_16 (Length: 577)
Name: NF1172_low_16
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 30 - 503
Target Start/End: Complemental strand, 40507090 - 40506618
Alignment:
| Q |
30 |
gaccaaacacaccttaactatactaaaattttcaaaattgtttggagggtttaaaattctaaaaattgttaatt---atcattcgtgggatcgtattgtt |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | | |||||| |||||||||||||| |
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| T |
40507090 |
gaccaaacacaccttaactatactaaaattttcaaaattgtttgaagggtttaaaattctacaaattgttaaattaaaacattcgcgggatcgtattgtt |
40506991 |
T |
|
| Q |
127 |
gaccttgaggcagagaactagatacacgtgtaataatatgtggtatgtatgtgaaaatctgagattcgcaaaggataaggaagaagttccagttgagccg |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40506990 |
gaccttgaggcagagaactagatacacgtgtaataatatgtggtatgt----gaaaatctgagattcgcaaaggataaggaagaagttccagttgagccg |
40506895 |
T |
|
| Q |
227 |
aaggaagaacgaaattgcaatcttcttgattagctttgaaatggatattcacacacacatttcaatacccacaacttttatatcccatcgtttctcttca |
326 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40506894 |
aaggaagaacgaaatttcaatcttcttgattagctttgaaatggatattcacacacacatttcaatacccacaacttttatatcccatcgtttctcttca |
40506795 |
T |
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| Q |
327 |
ccaacccaaactttatcatcctcttctttccattcctatttccccttcaaatttgtagtatgttccaaaagggacgatcaatctcaaacaaacgccgata |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40506794 |
ccaacccaaactttatcatcctcttctttccattcctatttccccttcaaatttgtagtatgttccaaaagggacgatcaatctcaaacaaacgccgata |
40506695 |
T |
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| Q |
427 |
acaatggtannnnnnnacaattactgtttttattcttcacttcagccagcatactacaagagaacttgatacatgca |
503 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40506694 |
acaatggtatttttctacaattactgtttttattcttcacttcagccagcatactacaagagaacttgatacatgca |
40506618 |
T |
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