View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_161 (Length: 246)
Name: NF1172_low_161
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_161 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 36774313 - 36774546
Alignment:
| Q |
1 |
ttgctaactacggaaatttcaaagaactatggtggtcggttgaagtggaagcattttgttctatcacacttttgttcaccactaattt---attaaactc |
97 |
Q |
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| T |
36774313 |
ttgctaactacggaaatttcaaagaactatggtggtcggttgaagtggaagcattttgttctatcacacttttgttcacccctaattttttattaaactc |
36774412 |
T |
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| Q |
98 |
aaaaacagttttgtttagaataaattacactctcatctcctccgaataattgtttaaattacactatcctctcttcttatatcctctccattcttatgca |
197 |
Q |
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|||||||||||||| |||| |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36774413 |
aaaaacagttttgtctagagtaaattacactctcttcttctcggaataattgtttaaattacactatcctctcttcttatatcctctccattcttataca |
36774512 |
T |
|
| Q |
198 |
aaacatgttagaaaaaattacattcttctttctc |
231 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
36774513 |
aaacatgttagaaaaaattacactcttctttctc |
36774546 |
T |
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