View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_164 (Length: 242)
Name: NF1172_low_164
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_164 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8763026 - 8763256
Alignment:
| Q |
1 |
atgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactgattagaattaaaaagcctttca |
100 |
Q |
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| T |
8763026 |
atgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactaattagatttaaaaagcctttca |
8763125 |
T |
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| Q |
101 |
taagaaaaatatttttaaaagatgacttacttgccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtgtccaaacaagtttttg |
200 |
Q |
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| T |
8763126 |
taagaaaaatatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtgtccaaacaagtttttg |
8763225 |
T |
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| Q |
201 |
tttcttaacaacttgaatatctttctctcct |
231 |
Q |
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| T |
8763226 |
tttcttaacaacttgaatatctttctctcct |
8763256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8789505 - 8789577
Alignment:
| Q |
1 |
atgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8789505 |
atgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
8789577 |
T |
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