View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_168 (Length: 228)
Name: NF1172_low_168
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_168 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 2463701 - 2463607
Alignment:
| Q |
78 |
tttcatacctcaaataataacttcatggatcttgttccactagttcatcttgtctctctcagtttgacagcctttccttttcaatttctcttctc |
172 |
Q |
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| T |
2463701 |
tttcatacctcaaataataacttcatggatcttgttccactagttcatcttgtctctctcagtttgactgcctttccttttcaatttctcttctc |
2463607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 2463774 - 2463724
Alignment:
| Q |
32 |
ctacccatattcccaattttcctaatttcaaacccaaacattaaaatttca |
82 |
Q |
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| T |
2463774 |
ctacccaaattcccaattttcctaatttcaaaccctaacattaaaatttca |
2463724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 15694978 - 15694929
Alignment:
| Q |
33 |
tacccatattcccaattttcctaatttcaaacccaaacattaaaatttca |
82 |
Q |
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| T |
15694978 |
tacccaaattctcaattttcctaatttcaaaccctaactttaaaatttca |
15694929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 15701958 - 15701909
Alignment:
| Q |
33 |
tacccatattcccaattttcctaatttcaaacccaaacattaaaatttca |
82 |
Q |
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| T |
15701958 |
tacccaaattctcaattttcctaatttcaaaccctaactttaaaatttca |
15701909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 29914817 - 29914862
Alignment:
| Q |
33 |
tacccatattcccaattttcctaatttcaaacccaaacattaaaat |
78 |
Q |
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|||||| ||| ||||||||||||||||||||||| ||||||||||| |
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| T |
29914817 |
tacccaaatttccaattttcctaatttcaaaccctaacattaaaat |
29914862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 29963970 - 29964015
Alignment:
| Q |
33 |
tacccatattcccaattttcctaatttcaaacccaaacattaaaat |
78 |
Q |
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|||||| ||| ||||||||||||||||||||||| ||||||||||| |
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| T |
29963970 |
tacccaaatttccaattttcctaatttcaaaccctaacattaaaat |
29964015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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