View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_low_171 (Length: 219)
Name: NF1172_low_171
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_171 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 35629688 - 35629798
Alignment:
| Q |
92 |
ggtgggtagataatactggagagggtgtacatgcaaagacc-------tcgctcaaggtggatgttatgattagaatgagcataccttgttaggttgtga |
184 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35629688 |
ggtgggttgataacaatggagagggtgtacatgcaaagaccctgacgctcgctcaaggtggatgttatgattagaatgagcataccttgttaggttgtga |
35629787 |
T |
|
| Q |
185 |
ggcgagactta |
195 |
Q |
| |
|
||||||||||| |
|
|
| T |
35629788 |
ggcgagactta |
35629798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University