View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_181 (Length: 201)
Name: NF1172_low_181
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_181 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 1977870 - 1978054
Alignment:
| Q |
1 |
aagcactttcaaaggtcttgatacaaccctgttgagtgatttcatgggtcctttgatatgttttgaaagaatcctccatatttcatcgaatggttgctta |
100 |
Q |
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| T |
1977870 |
aagcactttcaaaggtcttgatacaaccctgttgagtgatttcatgggtcctttgatatgttttgaaagaatcctccatatttcattgaatggttgctta |
1977969 |
T |
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| Q |
101 |
acataactagactcaccttttgaattttcatcttcacctttgtcttgttcctcttcttgttgaatctcaacatcaatagtaacgt |
185 |
Q |
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| T |
1977970 |
acataactagactcaccttttgaattttcatcttcacctttgtcttgttcctcttcttgttgaatctcaacatcaatagtaacgt |
1978054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1948539 - 1948352
Alignment:
| Q |
1 |
aagcactttcaaaggtcttgatacaa---ccctgttgagtgatttcatgggtcctttgatatgttttgaaagaatcctccatatttcatcgaatggttgc |
97 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||| || || ||| |
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| T |
1948539 |
aagcactttcaaaggtcttgatacaagaacccttttgagtgatttcatgggtcctttgttaagttttgaaagaatcctccaaatttcattgagtgattgt |
1948440 |
T |
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| Q |
98 |
ttaacataactagactcaccttttgaattttcatcttcacctttgtcttgttcctcttcttgttgaatctcaacatcaatagtaacgt |
185 |
Q |
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| T |
1948439 |
ttaacataactagactcaccttttgaattttcatcttcacctttgtcttgttcctcttcttgttgaatttcaacatcaatagtaacgt |
1948352 |
T |
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