View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_2 (Length: 774)
Name: NF1172_low_2
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 610; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 135 - 765
Target Start/End: Complemental strand, 42738974 - 42738340
Alignment:
| Q |
135 |
tcttttgaaagtcttcttgggttactaccaatcggtggtcctaaatatttcaattagcgaaggaattttccattttaattgtctcatttgcaatatttgt |
234 |
Q |
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| T |
42738974 |
tcttttgaaagtcttcttgggttactaccaatcggtggtcctaaatatttcaattagcgaaggaattttccattttaattgtctcatttgcaatatttgt |
42738875 |
T |
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| Q |
235 |
ctgctacaatgaagaaagcattatattagtagtggtataataatgaaattcaaaaaatactttgcacatacaggcctgtagtgagatgataatgcccgaa |
334 |
Q |
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| T |
42738874 |
ctgctacaatgaagaaagcattatattagtagtggtataataatgaaattcaaaaaatactttgcacatacaggcctgtagtgagatgataatgcccgaa |
42738775 |
T |
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| Q |
335 |
ggtgcaagcaataaggaaagcattttcccggaatctaagtggtcagtcaaagacagaaatgcatactgcaaatttgcctacaacgtagtaccaagaccca |
434 |
Q |
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| T |
42738774 |
ggtgcaagcagtaaggaaagcattttcccggaatctaagtggtcagtcaaagacagaaatgcatactgcaaatttgcctacaacgtagtaccaagaccca |
42738675 |
T |
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| Q |
435 |
actggattacatcagaatttggtggccatgtgagt----tataattactatatattatcattagatttttaatttggtttgatatagtataaacttacat |
530 |
Q |
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| T |
42738674 |
actggattacatcagaatttggtggccatgtgagttatatataattactatatattatcatttgatttttaatttggtttgatatagtataaacttacat |
42738575 |
T |
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| Q |
531 |
tttgcatatattgccaagttcgtgctgattccatgcattgatgtattatatgttatctgcagaatattgaaatagttctcaaaagatctgtgggaaacat |
630 |
Q |
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| T |
42738574 |
tttgcatatattgccaagttcgtgctgattccatgcattgatgtattatatgttatctgcagaatattgaaatagttctcaaaagatctgtgggaaacat |
42738475 |
T |
|
| Q |
631 |
catatttttcaatggtttaagagacccttggagtggtggagggtaaagccttattatctcttctatcatcataccattattaacattgcaatatatttta |
730 |
Q |
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| T |
42738474 |
catatttttcaatggtttaagagacccttggagtggtggagggtaaagccttattatctcttctatcatcataccattattaacattgcaatatatttta |
42738375 |
T |
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| Q |
731 |
ggcatgctattattatttttatgtcatagtataat |
765 |
Q |
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| T |
42738374 |
ggcatgctattattatttttatgtcatagtataat |
42738340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 42739081 - 42739026
Alignment:
| Q |
91 |
actatgaaaataatttaaaggaaagaaaatagacaaacatggcatcttttgaaagt |
146 |
Q |
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| T |
42739081 |
actatgaaaataatctaaaggaaagaaaatagacaaacatggcatcttttgaaagt |
42739026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 604 - 675
Target Start/End: Complemental strand, 42746033 - 42745962
Alignment:
| Q |
604 |
agttctcaaaagatctgtgggaaacatcatatttttcaatggtttaagagacccttggagtggtggagggta |
675 |
Q |
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| T |
42746033 |
agttctgaaaagatatgggagcaacattatcttcttcaatggtttaagagacccttggagtggtggagggta |
42745962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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