View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_25 (Length: 517)
Name: NF1172_low_25
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 30 - 505
Target Start/End: Original strand, 13898003 - 13898478
Alignment:
| Q |
30 |
gattctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898003 |
gattctaagacaggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattt |
13898102 |
T |
|
| Q |
130 |
tcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagaaactatgtctctgaagtagtttcctttagggaaattact |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13898103 |
tcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagatactatgtctctgaagtagtttcctttagggaaattact |
13898202 |
T |
|
| Q |
230 |
aaactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtgaaccatggccctctgaatctacatgttccatta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898203 |
aaactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtgaaccatggccctctgaatctacatgttccatta |
13898302 |
T |
|
| Q |
330 |
tgatgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataaggcagcattccgaaaataggccaattgggtaggccac |
429 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898303 |
tgatgtttaagaatgtcagtgatccattcatacaggttggttttgagtcctttgattaaataaggcagcattccgaaaataggccaattgggtaggccac |
13898402 |
T |
|
| Q |
430 |
gatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttggatatt |
505 |
Q |
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| T |
13898403 |
gatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttggatatt |
13898478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 33 - 502
Target Start/End: Complemental strand, 13887198 - 13886729
Alignment:
| Q |
33 |
tctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcc |
132 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||| |||||||| ||||| ||||||||||||||||||||| |||||| |
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| T |
13887198 |
tctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcc |
13887099 |
T |
|
| Q |
133 |
tttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagaaactatgtctctgaagtagtttcctttagggaaattactaaa |
232 |
Q |
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||||||||||||||||||| || || |||||||| |||||||||| ||||| ||||||||| ||||| ||||| ||||||||||||||||| || | || |
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| T |
13887098 |
tttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaagtaaatcagaaactgtgtctttgaagaagtttcctttagggaaaatattgaa |
13886999 |
T |
|
| Q |
233 |
ctttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtgaaccatggccctctgaatctacatgttccattatga |
332 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| | | |||| || ||||||||||||||| |||||||| | |||||||| ||| |
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| T |
13886998 |
ctttgttttgagaagatgttctaaattttgaggttctgaggttatgatgcaattgaaacttgtgaaccatggccctttgaatctaaaggttccattttga |
13886899 |
T |
|
| Q |
333 |
tgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataaggcagcattccgaaaataggccaattgggtaggccacgat |
432 |
Q |
| |
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|||||||| | || || || | |||||||| |||||||||||||||| | ||||| |||| |||||||| | |||||||||||| | ||||||| ||| |
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| T |
13886898 |
tgtttaagtgtttcggttatgccttcatacatgttggttttgagtcctatcattaaggaaggtagcattccaagaataggccaatttgttaggccatgat |
13886799 |
T |
|
| Q |
433 |
gttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttggat |
502 |
Q |
| |
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|||| || || || | | |||||| |||||| ||||||| |||||||||||| || |||||||||| |
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| T |
13886798 |
gtttcttggagtgcaaggcatgaatgattatgaagacaatggatgcaataataatttctatgatttggat |
13886729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 31 - 505
Target Start/End: Original strand, 1035061 - 1035538
Alignment:
| Q |
31 |
attctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctatttt |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
1035061 |
attctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaaaatttgtcgaatgaaactcgatactagctatttt |
1035160 |
T |
|
| Q |
131 |
cctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagaaactatgtctctgaagtagtttcctttagggaaattacta |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || | | |
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| T |
1035161 |
cctttgtttctgccatgtttcattgtcagcagtgaaaataccgtctccgagtaattcagaaactatgtctctgaaatagtttcctttaggataaacagtg |
1035260 |
T |
|
| Q |
231 |
aactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtgaaccatggccctctgaatctacatgttccattat |
330 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| | |
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| T |
1035261 |
aactttgttttgagaacatgttctaaatttcgaggttc---agttataacatagttgaggctagtgaaccatgcccctctgaatctagatgttccattgt |
1035357 |
T |
|
| Q |
331 |
gatgtttaagaatgtcagtgatccattcatacaagttggttttgagtcctttgattaaataaggcagcattccgaaaataggccaattgggtagg----- |
425 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
1035358 |
gatgcttaagaatgtcagtgatccattcatacaagtttattttgagtcctttgattaaataaggcagcattccaaaaataggccaattggttaggccatg |
1035457 |
T |
|
| Q |
426 |
-ccacgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttggatatt |
505 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1035458 |
accatgatgttttttcgatcttaaagaacgaatgaatatgaaaacaatggctgcaataataatctcagtgatttgaatatt |
1035538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 28667370 - 28667463
Alignment:
| Q |
60 |
acaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgtttctgccatgtttcat |
153 |
Q |
| |
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||||||||||| | || ||| ||||||| || || || || ||||||||||||||||| |||||| |||| |||||||| |||||| |||||| |
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| T |
28667370 |
acaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcat |
28667463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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