View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_29 (Length: 496)
Name: NF1172_low_29
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 73 - 483
Target Start/End: Complemental strand, 44632622 - 44632203
Alignment:
| Q |
73 |
aaaaatggatgatcctagctcaaggacatttgaacggtgctctacagatacatttaacatcaacggaccatgtacatacccgatatgctatctgtattta |
172 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44632622 |
aaaattggatgatcctagctcaaggacatttgaacggtgctctacagatacatttaacatcaacggaccatgtacatacccgatatgctatctgtattta |
44632523 |
T |
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| Q |
173 |
tacaggtctggatgcgatggttggaaaccagagagtgtgacagtatatacccataactaccaacctgctacattttactacaatgcttttatccctaatg |
272 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44632522 |
tacaggtccggatacgatggttggaaaccagagagtgtgacagtatatacccataactaccaacctgctactttttactacaatgcttttatccctaatg |
44632423 |
T |
|
| Q |
273 |
gtgtttggtatggttttgattattgtcgtggttacttaccctccactgctac---------tgctgctgctgcactctagtgtagttgatcttcttagtt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44632422 |
gtgtttggtatggttttgattattgtcgtggttacttaccctccactgctactgctactgctgctgctgctgcactctagtgtagttgatcttcttagtt |
44632323 |
T |
|
| Q |
364 |
tatgaataagataataatgtagttttccaactgtgaaaccctctgttatatgcgggattagtggtccttctataagcccttcttttacatggaaatgttt |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44632322 |
tatgaataagataataatgtagttttccaactgtgaaaccctctgttatatgcgggattagtggtccttctataagcccttcttttatatggaaatgttt |
44632223 |
T |
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| Q |
464 |
gtttgtaggttttactgtct |
483 |
Q |
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| T |
44632222 |
gtttgtaggttttactgtct |
44632203 |
T |
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Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 8762350 - 8762424
Alignment:
| Q |
7 |
ccttgttcacctctatatgatgaaaagctagaggaagcaccatcattgaatgagttttttgcttgaaaaaatgga |
81 |
Q |
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| T |
8762350 |
ccttgttcacctctatatgatgaaaagctagtggaagcaccatcattgaatgagttttttgcttgaaaaaatgga |
8762424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 8788881 - 8788955
Alignment:
| Q |
7 |
ccttgttcacctctatatgatgaaaagctagaggaagcaccatcattgaatgagttttttgcttgaaaaaatgga |
81 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
8788881 |
ccttgttcacctctatatgatgaaaagctagtggaagcaccatcatggaatgaggtttttgcttgaaaaaatgga |
8788955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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