View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_3 (Length: 771)

Name: NF1172_low_3
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_3
NF1172_low_3
[»] chr1 (13 HSPs)
chr1 (12-649)||(8402132-8402773)
chr1 (12-250)||(22348039-22348281)
chr1 (1-207)||(179651-179861)
chr1 (76-250)||(18056784-18056960)
chr1 (93-207)||(23319993-23320107)
chr1 (76-250)||(45889596-45889774)
chr1 (111-207)||(30802439-30802535)
chr1 (135-207)||(37639385-37639457)
chr1 (135-250)||(16115851-16115966)
chr1 (135-207)||(35198131-35198203)
chr1 (25-76)||(23319890-23319941)
chr1 (36-76)||(18056991-18057031)
chr1 (37-76)||(45889805-45889844)
[»] chr3 (16 HSPs)
chr3 (25-250)||(51362275-51362503)
chr3 (1-233)||(52987462-52987698)
chr3 (1-248)||(50754008-50754257)
chr3 (36-250)||(19385166-19385380)
chr3 (36-250)||(7045148-7045365)
chr3 (93-250)||(8718101-8718258)
chr3 (93-250)||(9069988-9070145)
chr3 (82-221)||(39099226-39099365)
chr3 (113-246)||(16277342-16277475)
chr3 (12-114)||(31852242-31852348)
chr3 (25-76)||(8718318-8718369)
chr3 (25-76)||(9070205-9070256)
chr3 (135-207)||(23699371-23699443)
chr3 (135-207)||(23717826-23717898)
chr3 (135-207)||(23736282-23736354)
chr3 (164-207)||(17627210-17627253)
[»] chr8 (16 HSPs)
chr8 (1-246)||(4836513-4836762)
chr8 (1-246)||(4841958-4842207)
chr8 (24-250)||(7058114-7058344)
chr8 (25-221)||(8550533-8550733)
chr8 (76-252)||(32987334-32987512)
chr8 (82-250)||(39021975-39022143)
chr8 (1-174)||(2750101-2750278)
chr8 (82-250)||(15260748-15260917)
chr8 (111-207)||(7614111-7614207)
chr8 (36-122)||(1208829-1208917)
chr8 (1-107)||(39658355-39658463)
chr8 (135-207)||(15181834-15181906)
chr8 (163-251)||(1208708-1208796)
chr8 (36-74)||(39022186-39022224)
chr8 (35-76)||(15260666-15260707)
chr8 (183-250)||(42433701-42433768)
[»] chr2 (12 HSPs)
chr2 (1-250)||(25192892-25193145)
chr2 (25-250)||(18297947-18298176)
chr2 (76-251)||(20709773-20709950)
chr2 (36-122)||(4579673-4579763)
chr2 (135-207)||(25995330-25995402)
chr2 (135-207)||(4281738-4281810)
chr2 (163-249)||(14551297-14551382)
chr2 (160-232)||(4579793-4579865)
chr2 (29-76)||(20709981-20710028)
chr2 (163-221)||(36636915-36636973)
chr2 (163-207)||(5098760-5098804)
chr2 (1-38)||(22186094-22186131)
[»] chr7 (16 HSPs)
chr7 (1-253)||(15974748-15975004)
chr7 (37-221)||(46573348-46573536)
chr7 (93-253)||(30428870-30429030)
chr7 (94-252)||(46024025-46024183)
chr7 (111-216)||(33797965-33798070)
chr7 (1-122)||(28396842-28396967)
chr7 (1-122)||(48305356-48305481)
chr7 (6-122)||(48691112-48691232)
chr7 (135-221)||(5757416-5757502)
chr7 (135-207)||(32090621-32090693)
chr7 (167-250)||(12279745-12279828)
chr7 (163-250)||(48690895-48690982)
chr7 (163-207)||(44141229-44141273)
chr7 (163-250)||(28396722-28396809)
chr7 (163-204)||(48691038-48691079)
chr7 (25-76)||(46024236-46024287)
[»] chr4 (19 HSPs)
chr4 (1-222)||(637882-638105)
chr4 (1-250)||(26447224-26447477)
chr4 (25-250)||(45255975-45256206)
chr4 (36-207)||(51836937-51837113)
chr4 (93-247)||(22181153-22181307)
chr4 (94-252)||(27764238-27764396)
chr4 (93-221)||(4168387-4168515)
chr4 (82-250)||(21097140-21097308)
chr4 (111-246)||(36621627-36621762)
chr4 (101-248)||(38485590-38485733)
chr4 (95-154)||(18923355-18923414)
chr4 (135-207)||(50563679-50563751)
chr4 (183-251)||(50643742-50643810)
chr4 (36-79)||(27764451-27764494)
chr4 (26-76)||(21097349-21097399)
chr4 (36-76)||(4168567-4168607)
chr4 (163-207)||(6386519-6386563)
chr4 (25-72)||(22181051-22181098)
chr4 (36-76)||(18923466-18923506)
[»] chr5 (13 HSPs)
chr5 (36-250)||(28070010-28070218)
chr5 (1-207)||(2826878-2827089)
chr5 (93-248)||(13362772-13362927)
chr5 (82-251)||(23335603-23335773)
chr5 (37-122)||(34329247-34329332)
chr5 (135-207)||(18465506-18465578)
chr5 (76-248)||(25017121-25017280)
chr5 (134-207)||(16668743-16668816)
chr5 (82-151)||(42512273-42512342)
chr5 (163-250)||(34329127-34329214)
chr5 (135-207)||(8948933-8949003)
chr5 (25-76)||(23335509-23335560)
chr5 (34-76)||(25017048-25017090)
[»] chr6 (7 HSPs)
chr6 (1-220)||(24737502-24737726)
chr6 (4-250)||(33346186-33346436)
chr6 (5-207)||(877251-877452)
chr6 (135-207)||(18611232-18611304)
chr6 (135-231)||(29157245-29157341)
chr6 (163-250)||(34399641-34399728)
chr6 (135-250)||(15034920-15035040)
[»] scaffold0238 (1 HSPs)
scaffold0238 (36-253)||(25072-25300)
[»] scaffold0097 (2 HSPs)
scaffold0097 (76-251)||(13612-13789)
scaffold0097 (29-76)||(13820-13867)
[»] scaffold0194 (2 HSPs)
scaffold0194 (95-250)||(27607-27762)
scaffold0194 (25-76)||(27816-27867)
[»] scaffold0337 (1 HSPs)
scaffold0337 (163-247)||(7020-7104)
[»] scaffold0544 (1 HSPs)
scaffold0544 (163-249)||(10653-10739)


Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 12 - 649
Target Start/End: Original strand, 8402132 - 8402773
Alignment:
Q  12 gtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg------ctttatgtttta 105  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |      ||||||||||||    
T  8402132 gtgccaccaccggccaccgcgccggaatcatcatgtttggccggaaaagatgaagactcatctgaattgtagagagagagagagagagctttatgtttta 8402231  T
Q  106 gtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtt 205  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||| |  ||| |||||||||| |||||||||| |||||||||||||||||||||    
T  8402232 gtgagagaaatgtttgaagcagatgaagtttgatttggtttagtttgagaaacctaggattattacatgtgtacactagatctgatggttatgaagtgtt 8402331  T
Q  206 tacgtacggtacataaaaatttccttatccaccgtaacttttgccaatgtttctctcactttaagaaaaggatcaatcaagctacttcaagtaactacgt 305  Q
    || |       |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       
T  8402332 tatg-------cataaaaatttccttatccaccataacttttgccaatgtttctctcactttaagaaaaggatcaatcaagccacttcaagtaacta--- 8402421  T
Q  306 agtcactagacaaagtacataataagtgaaaatcaaatattcgactagtttaattttatatatcaaattgcccacgataaatttctcataaaggatattt 405  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8402422 -gtaactagacaaagtacataataagtgaaaatcaaatattcgactagtttaattttatatatcaaattgcccacgataaatttctcataaaggatattt 8402520  T
Q  406 tcatatgtaaaaggcattaaatttacattattttgaccataaa---------caatagccttttgtacgcacaaaattgtagttagagacagagaaatgt 496  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||| |||||||||| |||||||||||||||||||||||||||||||    
T  8402521 tcatatgtaaaaggcattaaatttacattattttgaccataaaggatatatcaaataaccttttgtacccacaaaattgtagttagagacagagaaatgt 8402620  T
Q  497 tggttgtataaaatatgctaaattgccacttgtttataaagagaggaaacttgtttgattcatgaatgaagatacccctcatattaagagagtcttgaac 596  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8402621 tggttgtataaaatatgctaaattgccacttgtttttaaagagaggaaacttgtttgattcatgaatgaagatacccctcatattaagagagtcttgaac 8402720  T
Q  597 aaaatacatagagatatatgcgaagcgttcatgaccaacaaataccaaggtcc 649  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8402721 aaaatacatagagatatatgcgaagcgttcatgaccaacaaataccaaggtcc 8402773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 22348281 - 22348039
Alignment:
Q  12 gtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagt 107  Q
    ||||||||||||||||||||    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |    ||||||||||||||    
T  22348281 gtgccaccaccggccaccgcggtggaatcatcatgtgtggccggaagagatgaagactcatatgaattgtagagagagagggagagctttatgttttagt 22348182  T
Q  108 gagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| || |||||||| |||||||||||    
T  22348181 gagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatatgatggttgtgaagtgttta 22348082  T
Q  208 cgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
     |  |||| |||||  |||||||||| |||| |||||||||||    
T  22348081 tgcgcggtgcataaggatttccttatgcaccataacttttgcc 22348039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 179861 - 179651
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga----gagtgctt 96  Q
    |||||||||| |||||||||||||||| ||| ||  |||||||||||||||||| || ||||||||||||||||||||||||||||||    ||| ||||    
T  179861 ccggcgcggtggtgccaccaccggccatcgcgccgaaatcatcatgtgtggccgaaagagatgaagactcatctgaattgtagagagagagggagagctt 179762  T
Q  97 tatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggtta 196  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||  |  ||||||||||||||||||||| |||||||||||     
T  179761 tatgttttagtgagagaaatgttttaagcaaatgaagtttgatttggtgtagtttgagaagcttgggattattacacgtgtacactagatctgatggttg 179662  T
Q  197 tgaagtgttta 207  Q
    |||||||||||    
T  179661 tgaagtgttta 179651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 76 - 250
Target Start/End: Complemental strand, 18056960 - 18056784
Alignment:
Q  76 aattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac 173  Q
    ||||||||||||||  || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  18056960 aattgtagagagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 18056861  T
Q  174 gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    |||||||||| ||||||||||| ||||||||||| | ||||| |||||  |||||||||| |||| |||||||||||    
T  18056860 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 18056784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 23319993 - 23320107
Alignment:
Q  93 gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  23319993 gctttatgttttagtgagagaaatgtttaaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatg 23320092  T
Q  193 gttatgaagtgttta 207  Q
    ||| |||||||||||    
T  23320093 gttgtgaagtgttta 23320107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 76 - 250
Target Start/End: Complemental strand, 45889774 - 45889596
Alignment:
Q  76 aattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattac 171  Q
    |||||||||||||||| |    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || |||||||||||||    
T  45889774 aattgtagagagagagggagaactttatgttttagtgagagaaatgtttgaaggaaatgaaatttgatttggtgtagtttgagaagcctaagattattac 45889675  T
Q  172 acgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    || |||| |||| ||||||||||| | || |||||| | |||||  |||| ||||||||||| |||| || ||||||||    
T  45889674 acatgtatactagatctgatggttgtaaaatgtttatgcacggtggataagaatttccttatgcaccataccttttgcc 45889596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 30802535 - 30802439
Alignment:
Q  111 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  30802535 agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctgatggttgtgaaatgttta 30802439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 37639457 - 37639385
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||| |||||||||||    
T  37639457 ttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgttta 37639385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 16115966 - 16115851
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatc 234  Q
    ||||||||||||||||| || |||||  |||||||||||||||||| || || |||||||| ||||||||||| | ||||| |||||  ||||||||||     
T  16115966 ttgatttggtgtagtttaagaagtcttggattattacacgtgtacattagatttgatggttgtgaagtgtttatgcacggtgcataaggatttccttatg 16115867  T
Q  235 caccgtaacttttgcc 250  Q
    ||   |||||||||||    
T  16115866 catgataacttttgcc 16115851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 35198131 - 35198203
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    ||||||| |||||||||||  |||||| ||||||||||||||||||||| ||||||||| | |||||||||||    
T  35198131 ttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaagtgttta 35198203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 23319890 - 23319941
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  23319890 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctga 23319941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 18057031 - 18056991
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  18057031 gaatcatcatgtgtggccggaagagataaagactcatctga 18056991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 45889844 - 45889805
Alignment:
Q  37 aatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  45889844 aatcatcatttgtggccggaagagatgaagactcatctga 45889805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 2e-79; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 51362275 - 51362503
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgc---tttatgttttagtgagagaaatgtttg 121  Q
    |||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||    
T  51362275 ccaccgcgtcagaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggaaagtttatgttttagtgagagaaatgtttg 51362374  T
Q  122 aagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataa 221  Q
    ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||    
T  51362375 aagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataa 51362474  T
Q  222 aaatttccttatccaccgtaacttttgcc 250  Q
      |||||||||| |||| |||||||||||    
T  51362475 ggatttccttatgcaccataacttttgcc 51362503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 52987462 - 52987698
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctt 96  Q
    |||||||||| |||||||||||| ||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |    |||    
T  52987462 ccggcgcggtggtgccaccaccgaccaccgcgccggaatcatcatgtgtggccgaaagagatgaagactcatctgaattgtagagagagagggagagctt 52987561  T
Q  97 tatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggtta 196  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||||||||     
T  52987562 tatgttttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttg 52987661  T
Q  197 tgaagtgtttacgtacggtacataaaaatttccttat 233  Q
    ||||||||||| | ||||| |||||  ||||||||||    
T  52987662 tgaagtgtttatgcacggtgcataaggatttccttat 52987698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 50754257 - 50754008
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag--agtgcttta 98  Q
    |||| ||||| ||| ||||||||||||| || || |||||||||||||||| ||||| |||| ||||||||||||||||||||||||||  || ||||||    
T  50754257 ccggtgcggtggtgtcaccaccggccactgcgccggaatcatcatgtgtggtcggaagagattaagactcatctgaattgtagagagagggagagcttta 50754158  T
Q  99 tgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatg 198  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| ||    
T  50754157 tgttttagtgagagaagtgtttgaatcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtg 50754058  T
Q  199 aagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttg 248  Q
    ||||||||| | ||||| |||||  ||||||||||  ||| |||||||||    
T  50754057 aagtgtttatgcacggtgcataaggatttccttatgtaccataacttttg 50754008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 36 - 250
Target Start/End: Original strand, 19385166 - 19385380
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtt 135  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||| |||||||||||||||||    
T  19385166 gaatcatcatctgtggccggaagagatgaagactcatctgaattgtagagagggagagttttatgttttagtgagggaaatgattgaagcaaatgaagtt 19385265  T
Q  136 tgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatcc 235  Q
    ||||||| ||||||||||| || |||  |||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||  |||||||||| |    
T  19385266 tgatttgatgtagtttgagaagcctagaattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgc 19385365  T
Q  236 accgtaacttttgcc 250  Q
    ||| |||||||||||    
T  19385366 accataacttttgcc 19385380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 36 - 250
Target Start/End: Original strand, 7045148 - 7045365
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatga 131  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||| |    
T  7045148 gaatcatcatgtgtggctggaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaat-a 7045246  T
Q  132 agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt 231  Q
    ||||||||||| |||||| |||| || ||| ||||||||||||||||||||| ||||||||||| |||||||||||   ||||| ||||| |||||||||    
T  7045247 agtttgatttgatgtagtctgagaagcctacgattattacacgtgtacactagatctgatggttgtgaagtgtttatacacggtgcataagaatttcctt 7045346  T
Q  232 atccaccgtaacttttgcc 250  Q
    || |||| |||||||||||    
T  7045347 atgcaccataacttttgcc 7045365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 93 - 250
Target Start/End: Complemental strand, 8718258 - 8718101
Alignment:
Q  93 gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg 192  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || || ||| ||||||||||| ||||||||| ||||||||    
T  8718258 gctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatg 8718159  T
Q  193 gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||| |||||| |||| ||||||| |||||  |||||||||| |||| |||||||||||    
T  8718158 gttgtgaagtatttatgtacggtgcataaggatttccttatgcaccataacttttgcc 8718101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 93 - 250
Target Start/End: Complemental strand, 9070145 - 9069988
Alignment:
Q  93 gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg 192  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || || ||| ||||||||||| ||||||||| ||||||||    
T  9070145 gctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatg 9070046  T
Q  193 gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||| |||||| |||| ||||||| |||||  |||||||||| |||| |||||||||||    
T  9070045 gttgtgaagtatttatgtacggtgcataaggatttccttatgcaccataacttttgcc 9069988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 39099365 - 39099226
Alignment:
Q  82 agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacac 181  Q
    |||||| ||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||    
T  39099365 agagagggagagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttagtgtagtttgagaagcctaggattattacacgtgtacac 39099266  T
Q  182 taaatctgatggttatgaagtgtttacgtacggtacataa 221  Q
    || ||||||||||| |||| | |||| | ||||| |||||    
T  39099265 tagatctgatggttgtgaaatatttatgcacggtgcataa 39099226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 16277342 - 16277475
Alignment:
Q  113 aaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtac 212  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||  || ||||||||||||||||||||| || |||||||| ||||||||||| | ||    
T  16277342 aaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcac 16277441  T
Q  213 ggtacataaaaatttccttatccaccgtaacttt 246  Q
    ||| |||||| |||||||||| |||| |||||||    
T  16277442 ggtgcataaagatttccttatgcaccataacttt 16277475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 31852348 - 31852242
Alignment:
Q  12 gtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagt 107  Q
    |||||||||||||||||||| ||  |||| ||||||||| || ||| ||||||||||||||||||| ||||||||||||| |    ||||||||||||||    
T  31852348 gtgccaccaccggccaccgcgccgaaatcgtcatgtgtgccctgaagagatgaagactcatctgaactgtagagagagagggagaactttatgttttagt 31852249  T
Q  108 gagagaa 114  Q
    |||||||    
T  31852248 gagagaa 31852242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 8718369 - 8718318
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  8718369 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctga 8718318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 9070256 - 9070205
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  9070256 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctga 9070205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 23699443 - 23699371
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||| ||||||||||  || ||| |||||||||||||||||| || || |||||||| |||||||||||    
T  23699443 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgttta 23699371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 23717898 - 23717826
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||| ||||||||||  || ||| |||||||||||||||||| || || |||||||| |||||||||||    
T  23717898 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgttta 23717826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 23736354 - 23736282
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||| ||||||||||  || ||| |||||||||||||||||| || || |||||||| |||||||||||    
T  23736354 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgttta 23736282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 17627210 - 17627253
Alignment:
Q  164 attattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  17627210 attattacacgtgtacactagatctgatggttgtgaagtgttta 17627253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 7e-76; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4836513 - 4836762
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctt 96  Q
    |||||||||| |||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    |||    
T  4836513 ccggcgcggtggtgccaccaccggccaccacgccggaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctt 4836612  T
Q  97 tatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggtta 196  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||  || ||||||||||||||||||||| |||||||||||     
T  4836613 tatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttg 4836712  T
Q  197 tgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttt 246  Q
    ||||||||||| | ||||| |||||  ||||| |||| |||| |||||||    
T  4836713 tgaagtgtttatgcacggtgcataagcatttctttatgcaccataacttt 4836762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4841958 - 4842207
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctt 96  Q
    |||||||||| |||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    |||    
T  4841958 ccggcgcggtggtgccaccaccggccaccacgccggaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctt 4842057  T
Q  97 tatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggtta 196  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||  || ||||||||||||||||||||| |||||||||||     
T  4842058 tatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttg 4842157  T
Q  197 tgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttt 246  Q
    ||||||||||| | ||||| |||||  ||||| |||| |||| |||||||    
T  4842158 tgaagtgtttatgcacggtgcataagcatttctttatgcaccataacttt 4842207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 7058344 - 7058114
Alignment:
Q  24 gccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtt 119  Q
    ||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |    ||||||||||||||||||||| ||||    
T  7058344 gccactgcgccagaatcatcatgtgtggccgaaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaagtgtt 7058245  T
Q  120 tgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacat 219  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||| ||||||||||| | ||||| |||    
T  7058244 tgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatcggatggttgtgaagtgtttatgcacggtgcat 7058145  T
Q  220 aaaaatttccttatccaccgtaacttttgcc 250  Q
    ||  |||||||||| |||| |||||||||||    
T  7058144 aagtatttccttatgcaccataacttttgcc 7058114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 8550733 - 8550533
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgttt 120  Q
    ||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |    |||||||||||||||||||||||||||    
T  8550733 ccaccgcgccagaatcatcatgtgtggccgtaagagatgaagactcatctgaattgtagagaaagagggagaactttatgttttagtgagagaaatgttt 8550634  T
Q  121 gaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacata 220  Q
    ||||||||||||||||||||||||||| |||||| ||  || ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||    
T  8550633 gaagcaaatgaagtttgatttggtgtaatttgagaagcttatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcata 8550534  T
Q  221 a 221  Q
    |    
T  8550533 a 8550533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 76 - 252
Target Start/End: Original strand, 32987334 - 32987512
Alignment:
Q  76 aattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac 173  Q
    ||||||||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  32987334 aattgtagagagagggagagctttatgttttagttagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 32987433  T
Q  174 gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgccaa 252  Q
    |||||||||| ||||||||||| ||||||||||| | ||||| |||||  |||||||||| |||| |||||||||||||    
T  32987434 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgccaa 32987512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 39022143 - 39021975
Alignment:
Q  82 agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacac 181  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |||||||    
T  39022143 agagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacatgtacac 39022044  T
Q  182 taaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    || |||||||| || ||||||||||| | ||||| |||||  |||||||||| |||| |||||||||||    
T  39022043 tagatctgatgattgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 39021975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 2750278 - 2750101
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag------agtgc 94  Q
    |||||||||| || ||||||||||||||||| |  |||||| |  |||||||||||| |||||||||||||||||||||||||||||||      || ||    
T  2750278 ccggcgcggtggttccaccaccggccaccgcgctggaatcaac--gtgtggccggaagagatgaagactcatctgaattgtagagagagtgagggagagc 2750181  T
Q  95 tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacg 174  Q
     ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  2750180 attatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 2750101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 15260748 - 15260917
Alignment:
Q  82 agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacac 181  Q
    |||||| ||| | ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||  |||||||| ||||||||||    
T  15260748 agagagggagagttttatattttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagccttggattattaaacgtgtacac 15260847  T
Q  182 taaatctgatggttatgaagtgtttacgtacggtacataa-aaatttccttatccaccgtaacttttgcc 250  Q
    || || |||||||| ||||||||||| | ||||| |||||  ||  ||||||| |||| |||||||||||    
T  15260848 tagatttgatggttgtgaagtgtttatgcacggtgcataaggaaaatccttatgcaccataacttttgcc 15260917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 7614207 - 7614111
Alignment:
Q  111 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| || ||||||||||| |||||||||||    
T  7614207 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctgatggttgtgaagtgttta 7614111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 1208917 - 1208829
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga--gagtgctttatgttttagtgagagaaatgtttga 122  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  1208917 gaatcatcatgtgtggccgcaagagatgaagactcatctgaattgtagagagagggagagctttatgttttagtgagagaaatgtttga 1208829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 39658355 - 39658463
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga--gagtgcttta 98  Q
    |||||||||| ||| ||||  ||||| |||  || |||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||| ||||||    
T  39658355 ccggcgcggtggtgacaccggcggccgccgtgccggaatcatcatgtgtggccggaagagatgaagactcatttgaattgtagagagagggagagcttta 39658454  T
Q  99 tgttttagt 107  Q
    |||||||||    
T  39658455 tgttttagt 39658463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 15181906 - 15181834
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||| |||||||| || |||||||||||    
T  15181906 ttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgttta 15181834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 1208796 - 1208708
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca 251  Q
    ||||||||||||||||||||| |||| |||||| | ||||||||| | ||||| |||||  |||||||||| |||| ||||||||||||    
T  1208796 gattattacacgtgtacactagatcttatggttgtaaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcca 1208708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 39022224 - 39022186
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatct 74  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  39022224 gaatcatcatgtgtggccggaagagatgaagactcatct 39022186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 15260666 - 15260707
Alignment:
Q  35 agaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  15260666 agaatcatcatatgtggccggaagagatgaagactcatctga 15260707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 42433768 - 42433701
Alignment:
Q  183 aaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||||||||||||| ||||||| ||| | ||||| |||||  |||||||||| |||| |||||||||||    
T  42433768 aaatctgatggttgtgaagtgcttatgcacggtgcataaggatttccttatgcaccataacttttgcc 42433701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 7e-76; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 25193145 - 25192892
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctt 96  Q
    |||||||||| ||||||||||||||||| || | ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |    |||    
T  25193145 ccggcgcggtggtgccaccaccggccactgcgctagaatcatcatgtgtggccggaagagatgaagactcgtatgaattgtagagagagagggagagctt 25193046  T
Q  97 tatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggtta 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||  |||||||||||||||||||| |||| ||||||     
T  25193045 tatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttgagaagcctagaattattacacgtgtacactagatctaatggttg 25192946  T
Q  197 tgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||||||||||| | ||||| |||||  |||||||||| |||| |||||||||||    
T  25192945 tgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 25192892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 18297947 - 18298176
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgc----tttatgttttagtgagagaaatgttt 120  Q
    ||||||| || |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| |     ||||||||||||||||||||| | ||    
T  18297947 ccaccgcgccggaatcatcatgtgtggtcggaagagatgaagactcatctaaattgtagagagagagggagagatttatgttttagtgagagaaacgctt 18298046  T
Q  121 gaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacata 220  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||    
T  18298047 gaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcata 18298146  T
Q  221 aaaatttccttatccaccgtaacttttgcc 250  Q
    |  |||||||||| |||| |||||||||||    
T  18298147 aggatttccttatgcaccataacttttgcc 18298176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 76 - 251
Target Start/End: Complemental strand, 20709950 - 20709773
Alignment:
Q  76 aattgtagagagagagtg--ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac 173  Q
    |||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||     
T  20709950 aattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacat 20709851  T
Q  174 gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca 251  Q
    |||||||||| ||||||||||| ||||||||||| | |||||  ||||  |||||||||| |||| ||||||||||||    
T  20709850 gtgtacactagatctgatggttgtgaagtgtttatgcacggtggataaggatttccttatgcaccataacttttgcca 20709773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 4579673 - 4579763
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga----gagtgctttatgttttagtgagagaaatgtttga 122  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||    
T  4579673 gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttga 4579763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 25995402 - 25995330
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    ||||||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  25995402 ttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtattta 25995330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 4281738 - 4281810
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||| ||||||||||| |  ||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  4281738 ttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgttta 4281810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 14551297 - 14551382
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgc 249  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||||| | || || ||||| ||||||||||| |||| ||||||||||    
T  14551297 gattattacacatgtacactagatctgatggttgtgaagtgtttatgcac-gtgcataagaatttccttatgcaccataacttttgc 14551382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 4579793 - 4579865
Alignment:
Q  160 taagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctta 232  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||| | | ||| |||||  |||||||||    
T  4579793 taagattattacacgtgtacactagatctgatggttgtaaagtgtttatgcatggtgcataaggatttcctta 4579865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 20710028 - 20709981
Alignment:
Q  29 cgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  20710028 cgcaccggaatcatcatgtgtgaccggaagagatgaagactcatctga 20709981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 36636915 - 36636973
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataa 221  Q
    |||||||||||||||| |  ||||||||||||| ||||||||||| ||| |||||||||    
T  36636915 gattattacacgtgtaaaacaaatctgatggttgtgaagtgtttatgtagggtacataa 36636973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 5098804 - 5098760
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||    
T  5098804 gattattacacgtgtacaataaatttgatggttgtgaagtgttta 5098760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22186094 - 22186131
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaa 38  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  22186094 ccggcgcggtggtgccaccaccggccaccgcgccagaa 22186131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 3e-75; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 15974748 - 15975004
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag----agtgctt 96  Q
    |||||||||| |||||||||||||||||||| || |||||||||||||||  ||||| |||||||||||||||||| ||||| ||||||    || ||||    
T  15974748 ccggcgcggtggtgccaccaccggccaccgcgccggaatcatcatgtgtgatcggaagagatgaagactcatctgacttgtacagagagggagagagctt 15974847  T
Q  97 tatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggtta 196  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||  || |||||||||||||| ||||||||||||| ||||||||     
T  15974848 tatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtgtactttgataagcctaagattattacatgtgtacactaaatatgatggttg 15974947  T
Q  197 tgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgccaat 253  Q
    ||||||||||| | ||||| |||||  |||||||||| |||| ||||||||||||||    
T  15974948 tgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgccaat 15975004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 46573348 - 46573536
Alignment:
Q  37 aatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatgaa 132  Q
    |||||||||||||| || ||| |||||||||||||||||||||||||| |||||| |    |||||||||||||||||||||||||||||||||||||||    
T  46573348 aatcatcatgtgtgccctgaagagatgaagactcatctgaattgtagatagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaa 46573447  T
Q  133 gtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataa 221  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| |||||||||||  |||||| |||||    
T  46573448 gtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtgcataa 46573536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 93 - 253
Target Start/End: Complemental strand, 30429030 - 30428870
Alignment:
Q  93 gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg 192  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||    
T  30429030 gctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatg 30428931  T
Q  193 gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgccaat 253  Q
    ||| |||| |||||| | ||||| |||||  |||||||||| |||| ||||||||||||||    
T  30428930 gttgtgaaatgtttatgcacggtgcataaggatttccttatgcaccataacttttgccaat 30428870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 94 - 252
Target Start/End: Complemental strand, 46024183 - 46024025
Alignment:
Q  94 ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatgg 193  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  46024183 ctttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttaatgtagtttgagaagtctaggattattacacgtgtacactatatctgatgg 46024084  T
Q  194 ttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgccaa 252  Q
    || ||||||||||| | ||||| |||||  |||| ||| | |||| |||||||||||||    
T  46024083 ttgtgaagtgtttatgcacggtgcataaggattttcttgtgcaccataacttttgccaa 46024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 33798070 - 33797965
Alignment:
Q  111 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgt 210  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||| ||||||||||| |||| |||||| |     
T  33798070 agaaatgtttgaagcaaatgaagtttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctgatggttgtgaaatgtttatgc 33797971  T
Q  211 acggta 216  Q
    ||||||    
T  33797970 acggta 33797965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28396967 - 28396842
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctt 96  Q
    |||||||||| ||||||||  ||||| |||  || |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |    |||    
T  28396967 ccggcgcggtggtgccaccggcggccgccgtgccggaatcatcatgtgtggccggaagagatgaagactcatctgaattgcagagagagagggagaactt 28396868  T
Q  97 tatgttttagtgagagaaatgtttga 122  Q
    ||||||||| ||||||||||||||||    
T  28396867 tatgttttattgagagaaatgtttga 28396842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 48305481 - 48305356
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga----gagtgctt 96  Q
    |||||||||| ||||||||  ||||| |||  || ||||||||||||||||||||||  |||||||||||||||||||||||||||||    ||| ||||    
T  48305481 ccggcgcggtggtgccaccgacggccgccgtgccggaatcatcatgtgtggccggaagtgatgaagactcatctgaattgtagagagagagggagagctt 48305382  T
Q  97 tatgttttagtgagagaaatgtttga 122  Q
    ||||||||| ||||||||||||||||    
T  48305381 tatgttttattgagagaaatgtttga 48305356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 48691232 - 48691112
Alignment:
Q  6 gcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga----gagtgctttatgt 101  Q
    ||||| ||||||||  ||||| |||  || |||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||| |||||||||    
T  48691232 gcggtggtgccaccggcggccgccgtgccggaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctttatgt 48691133  T
Q  102 tttagtgagagaaatgtttga 122  Q
    ||||||||||||||| |||||    
T  48691132 tttagtgagagaaatttttga 48691112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 5757502 - 5757416
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataa 221  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| |||||    
T  5757502 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 5757416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 32090693 - 32090621
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||||| || ||| |||||||||||||||| |||| || |||||||| |||| ||||||    
T  32090693 ttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgttta 32090621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 12279828 - 12279745
Alignment:
Q  167 attacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||||||||| ||||||| |||| |||||| |||||| |||| | ||||| |||||| |||||||||| |||| |||||||||||    
T  12279828 attacacgtatacactagatctaatggttgtgaagtctttatgcacggtgcataaagatttccttatgcaccataacttttgcc 12279745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 48690982 - 48690895
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||||||||||||||||||||| || |||||||| |||| |||||| | ||||| |||||  ||||| |||| |||| |||||||||||    
T  48690982 gattattacacgtgtacactagatttgatggttgtgaactgtttatgcacggtgcataaggatttctttatgcaccataacttttgcc 48690895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 44141229 - 44141273
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  44141229 gattattacacgtgtacactaaatcagatggttgtgaagtgttta 44141273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 28396809 - 28396722
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||||||||| | ||||||||| |||||||| || |||| |||||| | ||||| |||||  |||||||||| || |||||||||||||    
T  28396809 gattattactcttgtacactagatctgatgattgtgaaatgtttatgcacggtgcataaggatttccttatgcatcgtaacttttgcc 28396722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 48691079 - 48691038
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgt 204  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  48691079 gattattacacgtgtacactagatctgatggttgtgaagtgt 48691038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 46024287 - 46024236
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    ||||||| || |||||||||||||||| ||||| ||||||||||| ||||||    
T  46024287 ccaccgcgccggaatcatcatgtgtggtcggaagagatgaagactaatctga 46024236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 2e-73; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 638105 - 637882
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag--agtgcttta 98  Q
    |||||||||| |||||||||||||||||||   | |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||  || ||||||    
T  638105 ccggcgcggtggtgccaccaccggccaccgtgtcggaatcatcgtgtgtggccggaagagatgaagactcatctaaattgtagagagagggagagcttta 638006  T
Q  99 tgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatg 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||| ||||||||||| ||    
T  638005 tgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtacactagatctgatggttgtg 637906  T
Q  199 aagtgtttacgtacggtacataaa 222  Q
    ||||||||| | ||||| ||||||    
T  637905 aagtgtttatgcacggtgcataaa 637882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 26447224 - 26447477
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctt 96  Q
    ||||| |||| ||||||||| |||||||||| |  |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |    |||    
T  26447224 ccggcacggtggtgccaccatcggccaccgcgctggaatcatcatgtgtggccggaagagatgaggactcatctgaattgtatagagagagggagaactt 26447323  T
Q  97 tatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggtta 196  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | || |||  |||||||||||||||||||| |||||||||||     
T  26447324 tatgttttagtgagagaaatgtttgaagcaaatgaaatttgatttggtgtaatttgtgaagcctagaattattacacgtgtacactagatctgatggttg 26447423  T
Q  197 tgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||||||||||| | ||||| |||||  |||||||||| |||| | |||||||||    
T  26447424 tgaagtgtttatgcacggtgcataaggatttccttatgcaccattacttttgcc 26447477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 45256206 - 45255975
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg------ctttatgttttagtgagagaaatgt 118  Q
    ||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |      |||||||||||||||||||||||||    
T  45256206 ccaccgcgccggaatcatcctgtgtggccggaagagatgaagactcatctgaattgtagagagagagggggggagctttatgttttagtgagagaaatgt 45256107  T
Q  119 ttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtaca 218  Q
    |||||||||||||||||||||||| ||||||||||  || ||| ||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||| ||    
T  45256106 ttgaagcaaatgaagtttgatttgatgtagtttgaaaagcctaggattattacacgtgtacactatatctgatagttgtgaagtgtttatgcacggtgca 45256007  T
Q  219 taaaaatttccttatccaccgtaacttttgcc 250  Q
    |||  |||||||||| |||| |||||||||||    
T  45256006 taaggatttccttatgcaccataacttttgcc 45255975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 36 - 207
Target Start/End: Original strand, 51836937 - 51837113
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaa-tg 130  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||| ||| ||    
T  51836937 gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagtaaaatg 51837036  T
Q  131 aagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||||| |||||||||||||| |||||| ||||    
T  51837037 aagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacattaaatctgatggttgtgaagtattta 51837113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 93 - 247
Target Start/End: Original strand, 22181153 - 22181307
Alignment:
Q  93 gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg 192  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||||||||||||||||    
T  22181153 gctttatgttttagtgagagaaatgtttgaggcaaatgaagtttgatttggtgtagtttgagaaacctaggattattacacgtgtacactaaatctgatg 22181252  T
Q  193 gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaactttt 247  Q
    ||| |||||| |||| | ||||| |||||  |||||||||| |||| ||||||||    
T  22181253 gttgtgaagtttttatgcacggtgcataaggatttccttatgcaccataactttt 22181307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 94 - 252
Target Start/End: Complemental strand, 27764396 - 27764238
Alignment:
Q  94 ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatgg 193  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||  || ||||||||||||||||||||| |||||||||    
T  27764396 ctttatgttttagtgagagaaatgtttgaagcaaataaggtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatctgatgg 27764297  T
Q  194 ttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgccaa 252  Q
    ||  |||||||||| | ||||| |||||  |||||||||| |||| |||||||||||||    
T  27764296 ttgcgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgccaa 27764238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 4168515 - 4168387
Alignment:
Q  93 gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg 192  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||| |||||||||| |||||||||| ||||||||    
T  4168515 gctttatgttttagtgagagaaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaaacctaggattattacatgtgtacactagatctgatg 4168416  T
Q  193 gttatgaagtgtttacgtacggtacataa 221  Q
    ||| ||||||||||| | ||||| |||||    
T  4168415 gttgtgaagtgtttatgcacggtgcataa 4168387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 21097308 - 21097140
Alignment:
Q  82 agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacac 181  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||  ||  ||||||||||||||| ||    
T  21097308 agagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttaataagcttagaattattacacgtgtaaac 21097209  T
Q  182 taaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    || |||| |||||| |||||||||||   ||||| |||||  |||||||||| ||| ||||||||||||    
T  21097208 tagatctaatggttgtgaagtgtttatacacggtgcataaggatttccttatgcacggtaacttttgcc 21097140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 36621627 - 36621762
Alignment:
Q  111 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||  || |||||||||||||||||| || ||||||||||| ||||||||||| |     
T  36621627 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctgatggttgtgaagtgtttatgc 36621726  T
Q  211 acggtacataaaaatttccttatccaccgtaacttt 246  Q
    ||||| |||||  |||||||||| |||| |||||||    
T  36621727 acggtgcataaggatttccttatgcaccataacttt 36621762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 38485590 - 38485733
Alignment:
Q  101 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||  |||| |||||| || ||| |||||||||||||||||| || ||||||||||| ||||    
T  38485590 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttaatgtattttgagaagcctaggattattacacgtgtacattagatctgatggttgtgaa 38485689  T
Q  201 gtgtttacgtacggtacataaaaatttccttatccaccgtaacttttg 248  Q
    | ||||| | ||||| |||||    |||||||| |||| |||||||||    
T  38485690 gcgtttatgcacggtgcataa----ttccttatgcaccataacttttg 38485733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 18923414 - 18923355
Alignment:
Q  95 tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgag 154  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  18923414 tttatgttttagtgacagaaatatttgaagcaaatgaagtttgatttggtgtagtttgag 18923355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 50563679 - 50563751
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||||| |  |||  |||||||||||||||||||| ||||||||||| |||||||||||    
T  50563679 ttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgttta 50563751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 50643810 - 50643742
Alignment:
Q  183 aaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca 251  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||||| |||| ||||||||||||    
T  50643810 aaatctgatggttatgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcca 50643742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 27764494 - 27764451
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctgaatt 79  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  27764494 gaatcatcatgtgtggccggaagagatgaagactcatctgaatt 27764451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 21097399 - 21097349
Alignment:
Q  26 caccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    |||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  21097399 caccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctga 21097349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 4168607 - 4168567
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  4168607 gaatcatcatgtgtggccggaagagatgaagactcatctga 4168567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 6386519 - 6386563
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||    
T  6386519 gattattacacgtgtccactaaatctgatggttgtgaagtgttta 6386563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 22181051 - 22181098
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcat 72  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  22181051 ccaccgcgccagaatcatcatgtgtggccggaagagatgaaaactcat 22181098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 18923506 - 18923466
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  18923506 gaatcatcatgtgtggtcggaagagatgaagactcatctga 18923466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 6e-73; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 36 - 250
Target Start/End: Original strand, 28070010 - 28070218
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtt 135  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  28070010 gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagag------ctttatgttttagtgagagaaatgtttgaagcaaatgaagtt 28070103  T
Q  136 tgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatcc 235  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||| |||||  |||||||||| |    
T  28070104 tgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatagttgtgaagtgtttatgcacggtgcataaggatttccttatgc 28070203  T
Q  236 accgtaacttttgcc 250  Q
    ||| |||||||||||    
T  28070204 accataacttttgcc 28070218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 2826878 - 2827089
Alignment:
Q  1 ccggcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccg---gaaaagatgaagactcatctgaattgtagagagag--agtgct 95  Q
    |||||||||| ||||||||||||||||| ||  | |||||||||||| ||||||   ||| |||||||||||||| ||||||||||||||||  || |||    
T  2826878 ccggcgcggtggtgccaccaccggccactgcgtcggaatcatcatgtatggccgccggaagagatgaagactcatttgaattgtagagagagggagagct 2826977  T
Q  96 ttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggtt 195  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||    
T  2826978 ttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaagataattacacgtgtacactagatctgatggtt 2827077  T
Q  196 atgaagtgttta 207  Q
     | |||||||||    
T  2827078 gtaaagtgttta 2827089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 93 - 248
Target Start/End: Complemental strand, 13362927 - 13362772
Alignment:
Q  93 gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg 192  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||| ||||||| ||||||||    
T  13362927 gctttatgttttagtgagagaaatgtttgaagcaaatgaattttgatttggtgtagtttgagaagcctatgattattacacgtatacactagatctgatg 13362828  T
Q  193 gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttg 248  Q
    ||| ||||||||||| | ||||| |||||  |||||||||| |||| |||||||||    
T  13362827 gttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttg 13362772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 82 - 251
Target Start/End: Original strand, 23335603 - 23335773
Alignment:
Q  82 agagagagagtgctttatgtttt-agtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtaca 180  Q
    |||||| ||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||    
T  23335603 agagagggagagctttatgtttttagtgagagaaatgtttgatgcaaatgaactttgatttggtgtagtttgagaagcctatgattattacacgtgtaca 23335702  T
Q  181 ctaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca 251  Q
    ||| ||||||||||| |||| |||||| | ||||| ||||   |||||||||| |||| ||||||||||||    
T  23335703 ctagatctgatggttgtgaaatgtttatgcacggtgcatacggatttccttatgcaccataacttttgcca 23335773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 34329332 - 34329247
Alignment:
Q  37 aatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgctttatgttttagtgagagaaatgtttga 122  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34329332 aatcatcatgtgtggccggaagagatgaagacccatctgaattgtagagagagagagctttatgttttagtgagagaaatgtttga 34329247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 18465506 - 18465578
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  18465506 ttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgttta 18465578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 25017121 - 25017280
Alignment:
Q  76 aattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac 173  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||               |||||||| |  |||| ||||||||||    
T  25017121 aattgtagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatga---------------agtttgagaaacctaaaattattacac 25017205  T
Q  174 gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttg 248  Q
    |||||||||| ||||||||||| ||||||||||| | ||||| |||||  |||||||||| |||| |||||||||    
T  25017206 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttg 25017280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 16668743 - 16668816
Alignment:
Q  134 tttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  16668743 tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgttta 16668816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 42512342 - 42512273
Alignment:
Q  82 agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagttt 151  Q
    |||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42512342 agagagggagagctttaggttttagtgagagaaatgtttgaagtaaatgaagtttgatttggtgtagttt 42512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 34329214 - 34329127
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||||||||  ||||||||||| ||||||||||| ||||||||||| | ||||| |||||| |||||||||| |||| |||||||||||    
T  34329214 gattattattcgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaagatttccttatgcaccataacttttgcc 34329127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 8949003 - 8948933
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||||||||||| || ||| ||||||  ||||||||||||||||||||| ||| |||||||||||    
T  8949003 ttgatttggtgtagtttgagaagcctaggattat--cacgtgtacactaaatctgatagttttgaagtgttta 8948933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 23335509 - 23335560
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    ||||||| || ||||||||||||||||| |||| ||||||||||||||||||    
T  23335509 ccaccgcgccggaatcatcatgtgtggctggaagagatgaagactcatctga 23335560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 25017048 - 25017090
Alignment:
Q  34 cagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  25017048 cagaatcatcatgtgttgccggaagagatgaagactcatctga 25017090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 4e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24737502 - 24737726
Alignment:
Q  1 ccggcgcggttgtgccaccaccggc---caccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag--agtgct 95  Q
    |||||||||| ||||||||||| ||   |||||  || |||||||||||||||||||||| |||||||||||||||||||||||||||||||  || | |    
T  24737502 ccggcgcggtggtgccaccaccagcgaccaccgtgccggaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagggagagtt 24737601  T
Q  96 ttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggtt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||| |||||||||||    
T  24737602 ttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacgtgtacactagatctgatggtt 24737701  T
Q  196 atgaagtgtttacgtacggtacata 220  Q
     ||||||||||| | ||||| ||||    
T  24737702 gtgaagtgtttatgcacggtgcata 24737726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 33346186 - 33346436
Alignment:
Q  4 gcgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttat 99  Q
    ||||||| ||||||| | |||||||| | || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |    ||||||    
T  33346186 gcgcggtggtgccactatcggccaccacgccggaatcatcatgtgtggccgaaagagatgaagactcatctgaattgtagagagagagggagaactttat 33346285  T
Q  100 gttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatga 199  Q
    ||||||||||||||||||||||||||||| |||||||||||||  |||||||||| || |||  |||||||||||||||||||| || |||||||| |||    
T  33346286 gttttagtgagagaaatgtttgaagcaaacgaagtttgatttgacgtagtttgagaagcctataattattacacgtgtacactagatttgatggttgtga 33346385  T
Q  200 agtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    |||||||| | ||||| |||||  |||||||||| |||| |||||||||||    
T  33346386 agtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc 33346436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 877452 - 877251
Alignment:
Q  5 cgcggttgtgccaccaccggccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag--agtgctttatgtt 102  Q
    |||||| ||||||||| |||||||| | || |||||||||||||||||| ||| |||||||||||| |   ||||||||||||||  || ||||| ||||    
T  877452 cgcggtggtgccaccatcggccaccacgccggaatcatcatgtgtggcctgaagagatgaagactcct---aattgtagagagagggagagctttttgtt 877356  T
Q  103 ttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||| ||||||||||   |||| |||||| ||||||    
T  877355 ttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattatacgtgtacacctgatctaatggttgtgaagt 877256  T
Q  203 gttta 207  Q
    |||||    
T  877255 gttta 877251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 18611304 - 18611232
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta 207  Q
    |||||||||||| ||||||| || ||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  18611304 ttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgttta 18611232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 29157341 - 29157245
Alignment:
Q  135 ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt 231  Q
    |||||||||||||||||||| || |||  |||||||||||||||||||| ||||||||||| | ||||||||| | ||||| |||||  ||||||||    
T  29157341 ttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtgcataaggatttcctt 29157245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 34399728 - 34399641
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    ||||||||||||||||||||| |||||||| || |||||||||||  |||||| |||||  |||||||||| |||| |||||||||||    
T  34399728 gattattacacgtgtacactagatctgatgattgtgaagtgtttatatacggtgcataaggatttccttatgcaccataacttttgcc 34399641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 250
Target Start/End: Original strand, 15034920 - 15035040
Alignment:
Q  135 ttgatttggtgtagtttgagg-----agtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcc 229  Q
    ||||||||||||||||||||      || ||| ||||||||||| ||||||||| ||||||||||| ||||   |||| | ||||| |||||  ||||||    
T  15034920 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatgcacggtgcataaggatttcc 15035019  T
Q  230 ttatccaccgtaacttttgcc 250  Q
    |||| |||| |||||||||||    
T  15035020 ttatgcaccataacttttgcc 15035040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 25072 - 25300
Alignment:
Q  36 gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagt--gctttatgt---------tttagtgagagaaatgtttgaag 124  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |   |||||||||         |||||||||||||||||||||||    
T  25072 gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagggaaagctttatgtctttatgtttttagtgagagaaatgtttgaag 25171  T
Q  125 caaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaa 224  Q
    |||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||| ||||||||||| | ||||| |||||  |    
T  25172 caaatgaagtttgatttggtgtagtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataagga 25271  T
Q  225 tttccttatccaccgtaacttttgccaat 253  Q
    ||||||||| |||| ||||||||||||||    
T  25272 tttccttatgcaccataacttttgccaat 25300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 76 - 251
Target Start/End: Complemental strand, 13789 - 13612
Alignment:
Q  76 aattgtagagagagagtg--ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac 173  Q
    |||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||     
T  13789 aattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacat 13690  T
Q  174 gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca 251  Q
    |||||||||| ||||||||||| ||||||||||| | |||||  ||||  |||||||||| |||| ||||||||||||    
T  13689 gtgtacactagatctgatggttgtgaagtgtttatgcacggtggataaggatttccttatgcaccataacttttgcca 13612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 13867 - 13820
Alignment:
Q  29 cgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  13867 cgcaccggaatcatcatgtgtgaccggaagagatgaagactcatctga 13820  T

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Target: scaffold0194 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 27762 - 27607
Alignment:
Q  95 tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||||||||||| |||| || ||    
T  27762 tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctagaattattacacgtgtacactagatcttatagt 27663  T
Q  195 tatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc 250  Q
    | ||||||||||| | |||||||||||   ||||||||| |||| |||||||||||    
T  27662 tgtgaagtgtttatgcacggtacataagtttttccttatgcaccataacttttgcc 27607  T

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Target: scaffold0194; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 27867 - 27816
Alignment:
Q  25 ccaccgcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga 76  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  27867 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctga 27816  T

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Target: scaffold0337 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 7104 - 7020
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaactttt 247  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||| | |||||  ||||| ||||| |||| |||| ||||||||    
T  7104 gattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaagatttcgttatgcaccataactttt 7020  T

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Target: scaffold0544 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 10653 - 10739
Alignment:
Q  163 gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgc 249  Q
    ||||||||||  || |||||| ||||||||||| ||||||||||| | |||||  ||||  |||||||||| |||| ||||||||||    
T  10653 gattattacatatgcacactagatctgatggttgtgaagtgtttatgcacggtgtataaggatttccttatgcaccataacttttgc 10739  T

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