View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_30 (Length: 496)
Name: NF1172_low_30
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 30 - 382
Target Start/End: Complemental strand, 1674085 - 1673733
Alignment:
| Q |
30 |
tcttgaagcggcaaaactgacgcattttgaaaacttagacaacatagaaagaaaaatatataataacaaaaatgaaactttgtatgattaatgtgaatgt |
129 |
Q |
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| T |
1674085 |
tcttgaagcggcaaaactgacgcattttgaaaacttagacaacatagaaagaaaaatatataataacaaaaatgaaactttgtatgattaatgtgaatgt |
1673986 |
T |
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| Q |
130 |
ttatgaagaatttgaaatgggttttgaagaaattcaaatgggtgtgttatttttatatgatgatgagaaaaagtatttttggtaatttttaattttgcat |
229 |
Q |
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| T |
1673985 |
ttatgaagaatttgaaatgggttttgaagaaattcaaatgggtgtgttatttttatatgatgatgagaaaaagtatttttggtaatttttaattttgcat |
1673886 |
T |
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| Q |
230 |
tatgtattcagatggatatgaatatggaaaatgaagacggtgagcaaagatgacaagataaggccaactcaacacaacatggatttggaatgcaatgttt |
329 |
Q |
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| T |
1673885 |
tatgtattcagatggatatgaatatggaaaatgaagacggtgagcaaagatgacaagataaggccaactcaacacaacatggatttggaatgcaatgttt |
1673786 |
T |
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| Q |
330 |
gcggattgtctattcatgaagcggttacatgatgcatcttcttctatgttcca |
382 |
Q |
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| T |
1673785 |
gcggattgtctattcatgaagcggttacatgatgcatcttcttctatgttcca |
1673733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 423 - 488
Target Start/End: Original strand, 1133887 - 1133952
Alignment:
| Q |
423 |
ttaagtgaagatcctcataaagtagtgcgttcccacgagttcaaaagacaacacaatagtataatc |
488 |
Q |
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| T |
1133887 |
ttaagtgaagatcctcataaagtagtgcgttcccacgagttcaaaagacaacacaataatataatc |
1133952 |
T |
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