View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_31 (Length: 488)
Name: NF1172_low_31
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 30 - 479
Target Start/End: Complemental strand, 37068799 - 37068350
Alignment:
| Q |
30 |
aaaatcatatttgaaggcattctgcaaagaaccaagactggactgagccnnnnnnnncaatcaatgagaaaaacataattggatagtaaacagagaaaaa |
129 |
Q |
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| T |
37068799 |
aaaatcatatttgaaggcattctgcaaagaaccaagactggactgagccttttttttcaatcaatgagaaaaacataattggatagtaaacagagaaaaa |
37068700 |
T |
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| Q |
130 |
caattgaattcaaggtaatcaaacaagaatatacagcaacacaagaaccccaatacctaatatgaaactttccattctgttttggagtgatatagaattg |
229 |
Q |
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| T |
37068699 |
caattgaattcaaggtaatcaaacaagaatatacagcaacacaagaaccccaatacctaatatgaaactttccattctgttttggagtgatatagaattg |
37068600 |
T |
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| Q |
230 |
cttttgtatttattaatcatgcaagtccggactccacaattttttctttgcatatatattttactagcacaaaagtaaaataaaagtgagaatgaaaata |
329 |
Q |
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| T |
37068599 |
cttttgtatttattaatcatgcaagtccggactccacaattttttctttgcatatatattttactagcataaaagtaaaataaaagtgagaatgaaaata |
37068500 |
T |
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| Q |
330 |
tgacaggggaaaagtgaaaactagtacacttaacatagtggaaacatgtgtaaaaatatctcttattttcttaaacttcacttgatatctctcttgaagt |
429 |
Q |
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| T |
37068499 |
tgacaggggaaaagtgaaaactagtacacttaacatagtggaaacatgtgtaaaaatatctcttattttcttaaacttcacttgatatctctcttgaagt |
37068400 |
T |
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| Q |
430 |
agggctatgatttatgaacctagatatgcctatttcagaacaagtataat |
479 |
Q |
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| T |
37068399 |
agggctatgatttatgaacctagatatgcctatttcagaacaagtataat |
37068350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 37078676 - 37078600
Alignment:
| Q |
99 |
aaaacataattggatagtaaacagagaaaaacaattgaattcaagg-taatcaaacaagaatatacagcaacacaag |
174 |
Q |
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|||||||||||||||| ||||||| ||||| ||| ||||||| || ||||| |||| ||||||||||||||||||| |
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| T |
37078676 |
aaaacataattggataataaacaggcaaaaataatcgaattcaggggtaatcgaacaggaatatacagcaacacaag |
37078600 |
T |
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