View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_32 (Length: 488)
Name: NF1172_low_32
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 6380920 - 6381368
Alignment:
| Q |
1 |
gaagaacactatcttaccatgttcttttaacactatattttttcacaccatcttcgccaaccattctcgcctccatgtctctctcacccaccactagcaa |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |
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| T |
6380920 |
gaagaacaccgtcttaccatgttcttttaacactagattttttcacaccatcttcgccaacc-ttctctcctccatgtctctctcacccaccaccagcaa |
6381018 |
T |
|
| Q |
101 |
cttttcctcgttcctattctattcaccactgctaccccacaaaataaacacaaagaagaagaaccccattatccccattcacagttacaaccccttccat |
200 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
6381019 |
ctcttcctcgtccctattctattcaccactgctaccccacaaaataaacacaaagaagaagaaccccattatccccattcacagttacaacccatcccac |
6381118 |
T |
|
| Q |
201 |
gaagcaacactcgttcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcttgctgagaaggttgattgggttaatcatatgaac |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
6381119 |
gaagcaacactcattcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcatgctgagaaggttgatggggttaatcatatgaac |
6381218 |
T |
|
| Q |
301 |
ttggttatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagcggatagagaacaagttcgaca-ttaatttttt |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
6381219 |
ttggttatgggttcttttgttgataagcttacttttaatgacatgtttgttgttcttaaggataaagcggatagagaacaagttcgacatttaattcttt |
6381318 |
T |
|
| Q |
400 |
gattgtataaaattacatgtctctctgttttcatgttttcaattccatttgg |
451 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
6381319 |
gattggataaaattacatgtctctc--ttttcatgttttcaattccatttgg |
6381368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 29148234 - 29148684
Alignment:
| Q |
1 |
gaagaacactatcttaccatgttcttttaacactatattttttcacaccatcttcgccaaccattctcgcctccatgtctctctcacccaccactagcaa |
100 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
29148234 |
gaagaacattgtcttaccatgttcttttaacacttgattttttcacaccatcttccccaaccattctctcctccatgtctctctcacccaccacctgcaa |
29148333 |
T |
|
| Q |
101 |
cttttcctcgttcctattctattcaccactgctaccccacaaaataaacacaaagaagaagaaccccattatccccattcacagttacaaccccttccat |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||| |
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| T |
29148334 |
ctcttcctcgttcctattctattcaccactgctaccccacaaaataaacataaagaagaagaaccccattatccccattcacaattacagcccctcccac |
29148433 |
T |
|
| Q |
201 |
gaagcaacactcgttcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcttgctgagaaggttgattgggttaatcatatgaac |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
29148434 |
gaagcaacaatcgttcctattctcagatggaaaacatgtgattggtgcaattaaggtttgtgctcttgctgagaaggttgatggggttaatcatatgaac |
29148533 |
T |
|
| Q |
301 |
ttggttatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagcggatagagaacaagttcgaca-ttaatttttt |
399 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||| ||| |
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| T |
29148534 |
ttgattatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagcagatagagatcaagttcaacatttaattcttt |
29148633 |
T |
|
| Q |
400 |
gattgtataaaattacatgtctctctgttttcatgttttcaattccatttg |
450 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
29148634 |
gattggataaaattacatgtctatctcttttcatgttttcaattccatttg |
29148684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 46187220 - 46187672
Alignment:
| Q |
1 |
gaagaacactatcttaccatgttcttttaacactatatttt-ttcacaccatcttcgccaaccattctcgcctccatgtctctctcacccaccactagca |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
46187220 |
gaagaacactctcttaccatgttcttttaacactagatttttttcacaccatcttccctaaccattctctcctccatgtctctctcacccaccaccagca |
46187319 |
T |
|
| Q |
100 |
acttttcctcgttcctattctattcaccactgctaccccacaaaataaacacaaagaagaagaaccccattatccccattcacagttacaaccccttcca |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |
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|
| T |
46187320 |
actcttcctcgttcctattctattcaccactgctaccccgcaaaataaacacaaagaagaagaaccccattatcccaattcacagttacagcccctccca |
46187419 |
T |
|
| Q |
200 |
tgaagcaacactcgttcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcttgctgagaaggttgattgggttaatcatatgaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
46187420 |
cgaagcaacactcgttcctattctcagatggaaaacatgtgattgctgcaattaaggtttgtgctcttgctgagaagcttgatggggttaatcatatgag |
46187519 |
T |
|
| Q |
300 |
cttggttatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagcggatagagaacaagttcgaca-ttaattttt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| || |
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| T |
46187520 |
cttggttatgggttcttttgttgataagcttacttttaaggacatgtttgttgttcttaaggataaagaagaaagagaacaagttcgacatttaattctt |
46187619 |
T |
|
| Q |
399 |
tgattgtataaaattacatgtctctctgttttcatgttttcaattccatttgg |
451 |
Q |
| |
|
|||||| ||||||| ||||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
46187620 |
tgattggataaaatcacatgcctctctcttttcatgttttcaattcaatttgg |
46187672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 49161968 - 49162030
Alignment:
| Q |
29 |
aacactatattttttcacaccatcttcgccaaccattctcgcctccatgtctctctcacccaccact |
95 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||| |||| |
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| T |
49161968 |
aacactatattttttcacaatatcttctccaaccattctc-cctcca---ctctctcacccaacact |
49162030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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