View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1172_low_33 (Length: 482)

Name: NF1172_low_33
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1172_low_33
NF1172_low_33
[»] chr7 (2 HSPs)
chr7 (16-324)||(39619178-39619486)
chr7 (361-421)||(39619517-39619577)
[»] chr6 (2 HSPs)
chr6 (16-324)||(17516516-17516824)
chr6 (361-407)||(17516445-17516491)
[»] chr3 (2 HSPs)
chr3 (16-324)||(52402520-52402828)
chr3 (361-407)||(52402853-52402899)
[»] chr1 (1 HSPs)
chr1 (35-168)||(24610426-24610560)


Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 39619178 - 39619486
Alignment:
Q  16 ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39619178 ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag 39619277  T
Q  116 agagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39619278 agagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg 39619377  T
Q  216 gaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttgctagatctg 315  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39619378 gaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttgctagatctg 39619477  T
Q  316 ctactaaaa 324  Q
    |||||||||    
T  39619478 ctactaaaa 39619486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 39619517 - 39619577
Alignment:
Q  361 ggatgtgaggaagaataagtggaacacattatccaaattctgtccttaattgaagacaatg 421  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  39619517 ggatgtgaggaagaataagtggaacacgttttccaaattctgtccttaattgaagacaatg 39619577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 17516824 - 17516516
Alignment:
Q  16 ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17516824 ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacagatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag 17516725  T
Q  116 agagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg 215  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17516724 agagggaagacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg 17516625  T
Q  216 gaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttgctagatctg 315  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17516624 gaaaagcgtggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaatttaaatggtttgctagatctg 17516525  T
Q  316 ctactaaaa 324  Q
    |||||||||    
T  17516524 ctactaaaa 17516516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 17516491 - 17516445
Alignment:
Q  361 ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt 407  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||    
T  17516491 ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt 17516445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 52402520 - 52402828
Alignment:
Q  16 ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag 115  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52402520 ataacagaacccaccggaaagaaccaaatcggaaaaaacaggaggaacagatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag 52402619  T
Q  116 agagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg 215  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52402620 agagagaaaacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg 52402719  T
Q  216 gaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttgctagatctg 315  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52402720 gaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaatttaaatggtttgctagatctg 52402819  T
Q  316 ctactaaaa 324  Q
    |||||||||    
T  52402820 ctactaaaa 52402828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Original strand, 52402853 - 52402899
Alignment:
Q  361 ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt 407  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||    
T  52402853 ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt 52402899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 24610560 - 24610426
Alignment:
Q  35 agaaccaaaccgg-aaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaagagagggaaaacgaggatc 133  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||     
T  24610560 agaaccaaaccgggaaaacacaggaggaacatatctgcagcaaactaaaaagctagaaacacttgaaattgatggagcaaagatagggaaaacatggatt 24610461  T
Q  134 tgaaacggatccacaacaagaacagagaaaaacga 168  Q
    |||||||||||||||| ||||| ||||||||||||    
T  24610460 tgaaacggatccacaaaaagaatagagaaaaacga 24610426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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