View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_34 (Length: 482)
Name: NF1172_low_34
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 39619169 - 39619486
Alignment:
| Q |
7 |
tcgaagaatataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgat |
106 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619169 |
tcgacgaacataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgat |
39619268 |
T |
|
| Q |
107 |
ggagcaaagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619269 |
ggagcaaagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
39619368 |
T |
|
| Q |
207 |
aggtcaccggaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619369 |
aggtcaccggaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttg |
39619468 |
T |
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| Q |
307 |
ctagatctgctactaaaa |
324 |
Q |
| |
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|||||||||||||||||| |
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| T |
39619469 |
ctagatctgctactaaaa |
39619486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 39619517 - 39619577
Alignment:
| Q |
361 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtccttaattgaagacaatg |
421 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
39619517 |
ggatgtgaggaagaataagtggaacacgttttccaaattctgtccttaattgaagacaatg |
39619577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 17516824 - 17516516
Alignment:
| Q |
16 |
ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17516824 |
ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacagatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag |
17516725 |
T |
|
| Q |
116 |
agagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg |
215 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17516724 |
agagggaagacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg |
17516625 |
T |
|
| Q |
216 |
gaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttgctagatctg |
315 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17516624 |
gaaaagcgtggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaatttaaatggtttgctagatctg |
17516525 |
T |
|
| Q |
316 |
ctactaaaa |
324 |
Q |
| |
|
||||||||| |
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|
| T |
17516524 |
ctactaaaa |
17516516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 17516491 - 17516445
Alignment:
| Q |
361 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt |
407 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||| |
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|
| T |
17516491 |
ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt |
17516445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 52402511 - 52402828
Alignment:
| Q |
7 |
tcgaagaatataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgat |
106 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52402511 |
tcgacgaacataacagaacccaccggaaagaaccaaatcggaaaaaacaggaggaacagatctgcagcaaactaaaaagctagaaacacatgaaattgat |
52402610 |
T |
|
| Q |
107 |
ggagcaaagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
206 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52402611 |
ggagcaaagagagagaaaacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
52402710 |
T |
|
| Q |
207 |
aggtcaccggaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52402711 |
aggtcaccggaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaatttaaatggtttg |
52402810 |
T |
|
| Q |
307 |
ctagatctgctactaaaa |
324 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
52402811 |
ctagatctgctactaaaa |
52402828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Original strand, 52402853 - 52402899
Alignment:
| Q |
361 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt |
407 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||| |
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|
| T |
52402853 |
ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt |
52402899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 24610560 - 24610426
Alignment:
| Q |
35 |
agaaccaaaccgg-aaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaagagagggaaaacgaggatc |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |
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| T |
24610560 |
agaaccaaaccgggaaaacacaggaggaacatatctgcagcaaactaaaaagctagaaacacttgaaattgatggagcaaagatagggaaaacatggatt |
24610461 |
T |
|
| Q |
134 |
tgaaacggatccacaacaagaacagagaaaaacga |
168 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||| |
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|
| T |
24610460 |
tgaaacggatccacaaaaagaatagagaaaaacga |
24610426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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