View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_35 (Length: 469)
Name: NF1172_low_35
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 10935209 - 10934953
Alignment:
| Q |
29 |
agagggtagttgtagatttaccagagttcgtgaaagacgtgaccgcagattgatacgcattgaagatcttcgttaacggggttgagaggttcgtagcaga |
128 |
Q |
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| T |
10935209 |
agagggtagttgtagatttaccagagttcgtgaaagacgtgaccgcagattgatacgcattgaagatcttcgttaacggggttgagaggttcgtagcaga |
10935110 |
T |
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| Q |
129 |
ttgaacaaatggtgccggagaattcgccatcgtcgaccatggattgaggtgtgaannnnnnnctgtgatttttctgggtggagtttctcgagaaaaagaa |
228 |
Q |
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| T |
10935109 |
ttgaacaaatggtgccggagaattcgccatcgtcgaccatggattgaggtgtgaatttttttctgtgatttttctgggtggagtttctcgagaaaaagaa |
10935010 |
T |
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| Q |
229 |
gtgagaaaatgagggaaaatttggaacctggcgctgagttaattttttgagagaggg |
285 |
Q |
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| T |
10935009 |
gtgagaaaatgagggaaaatttggaacctggcgctgagttaattttttgagagaggg |
10934953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 352 - 460
Target Start/End: Complemental strand, 10934886 - 10934778
Alignment:
| Q |
352 |
cagataattaaaacaatgaaaataataacggatttgaaaatgattgttgtcaaattgggaatgagtgaaagaatgggtttaattgtgttatccttcaaga |
451 |
Q |
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| T |
10934886 |
cagataattaaaacaatgaaaataataacggatttgaaaaagattgttgtcaaattgggaatgagtgaaagaatgggtttaattgtgttatccttcaaga |
10934787 |
T |
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| Q |
452 |
gagaataat |
460 |
Q |
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| T |
10934786 |
gagaataat |
10934778 |
T |
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