View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_36 (Length: 463)
Name: NF1172_low_36
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 4528072 - 4528425
Alignment:
| Q |
13 |
tgaagaagtgaaaggggaaagaggggtttatataggaggaaagagaggaagttacgggcaggtcgggtagctgaccgatatacagactggcgaaaggttg |
112 |
Q |
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| T |
4528072 |
tgaagaagtgaaaggggaaagaggggtttatataggaggaaagagaggaagttacgggcaggtcgggtagctgaccgatatacagactggcgaaaggttg |
4528171 |
T |
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| Q |
113 |
gttgccagctggatgagattctgttgtgtctcctcaacagattcagatttcacatggcgagtttttgtaataatcgaatcacgcgcgccaaatcgcgcgt |
212 |
Q |
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| T |
4528172 |
gttgccagctggatgagattctgttgtgtctcctcaacagattcagatttcacatggcgagtttttgtaataatcgaatcacgcgcgccaaatcgcgcgt |
4528271 |
T |
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| Q |
213 |
atgc--------tnnnnnnnnnnnnacacacatgagctgttta-tattttgcggttccattcatttgagaataagaatatcat-cctgatttttaaagaa |
302 |
Q |
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| T |
4528272 |
atgcttctctctttctctctctctcacacacatgagctgtttattattttgcggttccattca-ttgagaataagaatttcatgcctgatttttaaagaa |
4528370 |
T |
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| Q |
303 |
tataaaataaaaaatatttcttgattttctttattatttgaagagtttcaatgat |
357 |
Q |
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| T |
4528371 |
tataaaataaaaaatatttcttgattttctttattatttgaagagtttcaatgat |
4528425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 463
Target Start/End: Original strand, 4528495 - 4528531
Alignment:
| Q |
427 |
gatctcttacaattttcttgtgactcaaacaacccat |
463 |
Q |
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| T |
4528495 |
gatctcttacaattttcttgtgactcaaacaacccat |
4528531 |
T |
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