View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_low_38 (Length: 457)
Name: NF1172_low_38
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 30 - 408
Target Start/End: Original strand, 37490349 - 37490746
Alignment:
| Q |
30 |
gtatgtacgactagtactactcaataaagaaaacaacacataaaatttaccttcgaatttcaagtatatgccaaaacattctcatcatgcatgcaactat |
129 |
Q |
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| T |
37490349 |
gtatgtacgactagtactactcaataaagaaa-caacacataaaatttaccttcgaatttcaagtatatgccaaaacattctcatcatgcatgcaactat |
37490447 |
T |
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| Q |
130 |
ataataccaaaaaccttcctatttcattacttgagtagggactccagaaaccactgttttatagaaa-------------ttggaaagatataatgcagc |
216 |
Q |
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| T |
37490448 |
ataatacccaaaaccttcctatttcattacttgagtagggactccagaaaccactgttttatagaaattcaatattgaaattggaaagatataatgcagc |
37490547 |
T |
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| Q |
217 |
cttgacatggaaaggaagaaaagagtaattcactaccaggttctttgaaacaaaaagatatttgtacaaaatctacacaaattattttattcggtagaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37490548 |
cttgacatggaaaggaagaaaagagtaattcactaccaggttctttgaaacaaaaagatatttgtacaaaatccacacaaattattttattcggtagaaa |
37490647 |
T |
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| Q |
317 |
gaagaaacaacattagccatcggaaaactcacacatgtaagtggaatatttttgtc-------ataagactcatagtagtcaatcttagatatcagtgc |
408 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |
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| T |
37490648 |
gaagaaacaacattagccatcagaaaactcacacatataagtggaatatttttgtcagttgagataagactcgtagtagtcaatcttggatatcagtgc |
37490746 |
T |
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